Name: rs3163
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs3163

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr3:53225834 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: C>T
Variation Type: SNV Single Nucleotide Variation
Frequency: T=0.142045 (37598/264690, TOPMED)
T=0.161819 (40660/251268, GnomAD_exome)
T=0.174120 (25426/146026, ALFA) (+ 22 more)
T=0.150164 (21031/140054, GnomAD)
T=0.160387 (19452/121282, ExAC)
T=0.12064 (3409/28258, 14KJPN)
T=0.12035 (2017/16760, 8.3KJPN)
T=0.15708 (2043/13006, GO-ESP)
T=0.1210 (775/6404, 1000G_30x)
T=0.1210 (606/5008, 1000G)
T=0.1705 (764/4480, Estonian)
T=0.1988 (766/3854, ALSPAC)
T=0.1958 (726/3708, TWINSUK)
T=0.0825 (241/2922, KOREAN)
T=0.0963 (181/1880, HapMap)
T=0.0862 (158/1832, Korea1K)
T=0.189 (189/998, GoNL)
T=0.064 (39/608, Vietnamese)
T=0.165 (99/600, NorthernSweden)
T=0.184 (98/534, MGP)
T=0.224 (68/304, FINRISK)
T=0.194 (42/216, Qatari)
C=0.448 (60/134, SGDP_PRJ)
T=0.30 (12/40, GENOME_DK)
C=0.45 (10/22, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: TKT : Synonymous Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	162380	C=0.827534	T=0.172466
European	Sub	130204	C=0.815651	T=0.184349
African	Sub	13088	C=0.91313	T=0.08687
African Others	Sub	442	C=0.939	T=0.061
African American	Sub	12646	C=0.91223	T=0.08777
Asian	Sub	506	C=0.897	T=0.103
East Asian	Sub	412	C=0.891	T=0.109
Other Asian	Sub	94	C=0.93	T=0.07
Latin American 1	Sub	650	C=0.865	T=0.135
Latin American 2	Sub	5018	C=0.8930	T=0.1070
South Asian	Sub	148	C=0.831	T=0.169
Other	Sub	12766	C=0.83057	T=0.16943

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	C=0.857955	T=0.142045
gnomAD - Exomes	Global	Study-wide	251268	C=0.838181	T=0.161819
gnomAD - Exomes	European	Sub	135270	C=0.810165	T=0.189835
gnomAD - Exomes	Asian	Sub	48986	C=0.84373	T=0.15627
gnomAD - Exomes	American	Sub	34550	C=0.89389	T=0.10611
gnomAD - Exomes	African	Sub	16252	C=0.91656	T=0.08344
gnomAD - Exomes	Ashkenazi Jewish	Sub	10076	C=0.86979	T=0.13021
gnomAD - Exomes	Other	Sub	6134	C=0.8383	T=0.1617
Allele Frequency Aggregator	Total	Global	146026	C=0.825880	T=0.174120
Allele Frequency Aggregator	European	Sub	120122	C=0.816328	T=0.183672
Allele Frequency Aggregator	Other	Sub	11332	C=0.82933	T=0.17067
Allele Frequency Aggregator	African	Sub	8250	C=0.9119	T=0.0881
Allele Frequency Aggregator	Latin American 2	Sub	5018	C=0.8930	T=0.1070
Allele Frequency Aggregator	Latin American 1	Sub	650	C=0.865	T=0.135
Allele Frequency Aggregator	Asian	Sub	506	C=0.897	T=0.103
Allele Frequency Aggregator	South Asian	Sub	148	C=0.831	T=0.169
gnomAD - Genomes	Global	Study-wide	140054	C=0.849836	T=0.150164
gnomAD - Genomes	European	Sub	75850	C=0.80613	T=0.19387
gnomAD - Genomes	African	Sub	41986	C=0.91592	T=0.08408
gnomAD - Genomes	American	Sub	13624	C=0.87155	T=0.12845
gnomAD - Genomes	Ashkenazi Jewish	Sub	3318	C=0.8692	T=0.1308
gnomAD - Genomes	East Asian	Sub	3126	C=0.9044	T=0.0956
gnomAD - Genomes	Other	Sub	2150	C=0.8544	T=0.1456
ExAC	Global	Study-wide	121282	C=0.839613	T=0.160387
ExAC	Europe	Sub	73276	C=0.81944	T=0.18056
ExAC	Asian	Sub	25138	C=0.83996	T=0.16004
ExAC	American	Sub	11560	C=0.89758	T=0.10242
ExAC	African	Sub	10402	C=0.91732	T=0.08268
ExAC	Other	Sub	906	C=0.830	T=0.170
14KJPN	JAPANESE	Study-wide	28258	C=0.87936	T=0.12064
8.3KJPN	JAPANESE	Study-wide	16760	C=0.87965	T=0.12035
GO Exome Sequencing Project	Global	Study-wide	13006	C=0.84292	T=0.15708
GO Exome Sequencing Project	European American	Sub	8600	C=0.8081	T=0.1919
GO Exome Sequencing Project	African American	Sub	4406	C=0.9108	T=0.0892
1000Genomes_30x	Global	Study-wide	6404	C=0.8790	T=0.1210
1000Genomes_30x	African	Sub	1786	C=0.9513	T=0.0487
1000Genomes_30x	Europe	Sub	1266	C=0.8278	T=0.1722
1000Genomes_30x	South Asian	Sub	1202	C=0.8295	T=0.1705
1000Genomes_30x	East Asian	Sub	1170	C=0.8915	T=0.1085
1000Genomes_30x	American	Sub	980	C=0.859	T=0.141
1000Genomes	Global	Study-wide	5008	C=0.8790	T=0.1210
1000Genomes	African	Sub	1322	C=0.9478	T=0.0522
1000Genomes	East Asian	Sub	1008	C=0.8909	T=0.1091
1000Genomes	Europe	Sub	1006	C=0.8330	T=0.1670
1000Genomes	South Asian	Sub	978	C=0.831	T=0.169
1000Genomes	American	Sub	694	C=0.865	T=0.135
Genetic variation in the Estonian population	Estonian	Study-wide	4480	C=0.8295	T=0.1705
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.8012	T=0.1988
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.8042	T=0.1958
KOREAN population from KRGDB	KOREAN	Study-wide	2922	C=0.9175	T=0.0825
HapMap	Global	Study-wide	1880	C=0.9037	T=0.0963
HapMap	American	Sub	762	C=0.873	T=0.127
HapMap	African	Sub	690	C=0.952	T=0.048
HapMap	Asian	Sub	254	C=0.878	T=0.122
HapMap	Europe	Sub	174	C=0.885	T=0.115
Korean Genome Project	KOREAN	Study-wide	1832	C=0.9138	T=0.0862
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	C=0.811	T=0.189
A Vietnamese Genetic Variation Database	Global	Study-wide	608	C=0.936	T=0.064
Northern Sweden	ACPOP	Study-wide	600	C=0.835	T=0.165
Medical Genome Project healthy controls from Spanish population	Spanish controls	Study-wide	534	C=0.816	T=0.184
FINRISK	Finnish from FINRISK project	Study-wide	304	C=0.776	T=0.224
Qatari	Global	Study-wide	216	C=0.806	T=0.194
SGDP_PRJ	Global	Study-wide	134	C=0.448	T=0.552
The Danish reference pan genome	Danish	Study-wide	40	C=0.70	T=0.30
Siberian	Global	Study-wide	22	C=0.45	T=0.55

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 3	NC_000003.12:g.53225834C>T
GRCh37.p13 chr 3	NC_000003.11:g.53259850C>T
TKT RefSeqGene	NG_027815.1:g.35281G>A
GRCh37.p13 chr 3 fix patch HG957_PATCH	NW_004775426.1:g.74789C>T

Gene: TKT, transketolase (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
TKT transcript variant 1	NM_001064.4:c.1794G>A	P [CCG] > P [CCA]	Coding Sequence Variant
transketolase isoform 1	NP_001055.1:p.Pro598=	P (Pro) > P (Pro)	Synonymous Variant
TKT transcript variant 2	NM_001135055.3:c.1794G>A	P [CCG] > P [CCA]	Coding Sequence Variant
transketolase isoform 1	NP_001128527.1:p.Pro598=	P (Pro) > P (Pro)	Synonymous Variant
TKT transcript variant 3	NM_001258028.2:c.1818G>A	P [CCG] > P [CCA]	Coding Sequence Variant
transketolase isoform 2	NP_001244957.1:p.Pro606=	P (Pro) > P (Pro)	Synonymous Variant
TKT transcript variant 5	NR_047580.2:n.1764G>A	N/A	Non Coding Transcript Variant
TKT transcript variant X1	XM_011534054.2:c.1818G>A	P [CCG] > P [CCA]	Coding Sequence Variant
transketolase isoform X1	XP_011532356.1:p.Pro606=	P (Pro) > P (Pro)	Synonymous Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	C=	T
GRCh38.p14 chr 3	NC_000003.12:g.53225834=	NC_000003.12:g.53225834C>T
GRCh37.p13 chr 3	NC_000003.11:g.53259850=	NC_000003.11:g.53259850C>T
TKT RefSeqGene	NG_027815.1:g.35281=	NG_027815.1:g.35281G>A
TKT transcript variant 1	NM_001064.4:c.1794=	NM_001064.4:c.1794G>A
TKT transcript variant 1	NM_001064.3:c.1794=	NM_001064.3:c.1794G>A
TKT transcript variant 2	NM_001135055.3:c.1794=	NM_001135055.3:c.1794G>A
TKT transcript variant 2	NM_001135055.2:c.1794=	NM_001135055.2:c.1794G>A
TKT transcript variant 3	NM_001258028.2:c.1818=	NM_001258028.2:c.1818G>A
TKT transcript variant 3	NM_001258028.1:c.1818=	NM_001258028.1:c.1818G>A
TKT transcript variant 5	NR_047580.2:n.1764=	NR_047580.2:n.1764G>A
TKT transcript variant 5	NR_047580.1:n.1856=	NR_047580.1:n.1856G>A
GRCh37.p13 chr 3 fix patch HG957_PATCH	NW_004775426.1:g.74789=	NW_004775426.1:g.74789C>T
TKT transcript variant X1	XM_011534054.2:c.1818=	XM_011534054.2:c.1818G>A
TKT transcript variant X1	XM_011534054.1:c.1818=	XM_011534054.1:c.1818G>A
TKT transcript variant 4	NR_047579.1:n.1925=	NR_047579.1:n.1925G>A
TKT transcript variant 3	NM_001135056.1:c.1545=	NM_001135056.1:c.1545G>A
transketolase isoform 1	NP_001055.1:p.Pro598=	NP_001055.1:p.Pro598=
transketolase isoform 1	NP_001128527.1:p.Pro598=	NP_001128527.1:p.Pro598=
transketolase isoform 2	NP_001244957.1:p.Pro606=	NP_001244957.1:p.Pro606=
transketolase isoform X1	XP_011532356.1:p.Pro606=	XP_011532356.1:p.Pro606=

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

123 SubSNP, 25 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	WIAF	ss3194	Sep 19, 2000 (36)
2	DEBNICK	ss5435	Sep 19, 2000 (52)
3	CGAP-GAI	ss8894	Sep 19, 2000 (52)
4	LEE	ss1527812	Oct 05, 2000 (87)
5	WICVAR	ss3176739	Aug 15, 2001 (98)
6	LEE	ss4417789	May 29, 2002 (106)
7	YUSUKE	ss4922150	Aug 28, 2002 (108)
8	CGAP-GAI	ss16260955	Feb 27, 2004 (120)
9	PERLEGEN	ss23273682	Sep 20, 2004 (123)
10	MGC_GENOME_DIFF	ss28503886	Sep 24, 2004 (126)
11	MGC_GENOME_DIFF	ss28504889	Sep 24, 2004 (126)
12	APPLERA_GI	ss48407008	Mar 10, 2006 (126)
13	ILLUMINA	ss65742281	Oct 14, 2006 (127)
14	ILLUMINA	ss74878691	Dec 07, 2007 (129)
15	KRIBB_YJKIM	ss104796530	Feb 04, 2009 (130)
16	KRIBB_YJKIM	ss119337225	Dec 01, 2009 (131)
17	ILLUMINA	ss160614851	Dec 01, 2009 (131)
18	ILLUMINA	ss173571035	Jul 04, 2010 (132)
19	1000GENOMES	ss220134407	Jul 14, 2010 (132)
20	1000GENOMES	ss231818847	Jul 14, 2010 (132)
21	1000GENOMES	ss239233068	Jul 15, 2010 (132)
22	BL	ss253089513	May 09, 2011 (134)
23	GMI	ss277123755	May 04, 2012 (137)
24	NHLBI-ESP	ss342135539	May 09, 2011 (134)
25	ILLUMINA	ss480764128	May 04, 2012 (137)
26	ILLUMINA	ss480779949	May 04, 2012 (137)
27	ILLUMINA	ss481673778	Sep 11, 2015 (146)
28	ILLUMINA	ss485176782	May 04, 2012 (137)
29	1000GENOMES	ss489884960	May 04, 2012 (137)
30	CLINSEQ_SNP	ss491836138	May 04, 2012 (137)
31	ILLUMINA	ss537166400	Sep 11, 2015 (146)
32	TISHKOFF	ss556611623	Apr 25, 2013 (138)
33	SSMP	ss650289727	Apr 25, 2013 (138)
34	ILLUMINA	ss778517022	Sep 11, 2015 (146)
35	ILLUMINA	ss783034568	Aug 21, 2014 (142)
36	ILLUMINA	ss783994144	Sep 11, 2015 (146)
37	ILLUMINA	ss832292220	Apr 09, 2015 (144)
38	ILLUMINA	ss833973365	Sep 11, 2015 (146)
39	JMKIDD_LAB	ss974448477	Aug 21, 2014 (142)
40	EVA-GONL	ss978586841	Aug 21, 2014 (142)
41	JMKIDD_LAB	ss1067452011	Aug 21, 2014 (142)
42	JMKIDD_LAB	ss1070404151	Aug 21, 2014 (142)
43	1000GENOMES	ss1303991109	Aug 21, 2014 (142)
44	DDI	ss1429418305	Apr 09, 2015 (144)
45	EVA_GENOME_DK	ss1579960769	Apr 09, 2015 (144)
46	EVA_FINRISK	ss1584028290	Apr 09, 2015 (144)
47	EVA_DECODE	ss1588058208	Apr 01, 2015 (144)
48	EVA_UK10K_ALSPAC	ss1607062193	Apr 09, 2015 (144)
49	EVA_UK10K_TWINSUK	ss1650056226	Apr 09, 2015 (144)
50	EVA_EXAC	ss1687058577	Apr 09, 2015 (144)
51	EVA_MGP	ss1711019673	Apr 09, 2015 (144)
52	EVA_SVP	ss1712575195	Apr 01, 2015 (144)
53	ILLUMINA	ss1752475310	Sep 11, 2015 (146)
54	HAMMER_LAB	ss1799271709	Sep 11, 2015 (146)
55	WEILL_CORNELL_DGM	ss1921826656	Feb 17, 2016 (147)
56	JJLAB	ss2021472378	Sep 28, 2016 (149)
57	USC_VALOUEV	ss2149546058	Oct 12, 2018 (152)
58	HUMAN_LONGEVITY	ss2251555427	Dec 20, 2016 (150)
59	SYSTEMSBIOZJU	ss2625234573	Oct 12, 2018 (152)
60	ILLUMINA	ss2633948526	Oct 12, 2018 (152)
61	GRF	ss2704919382	Oct 12, 2018 (152)
62	GNOMAD	ss2733834329	Oct 12, 2018 (152)
63	GNOMAD	ss2747031130	Oct 12, 2018 (152)
64	GNOMAD	ss2792942364	Oct 12, 2018 (152)
65	SWEGEN	ss2992310215	Oct 12, 2018 (152)
66	BIOINF_KMB_FNS_UNIBA	ss3024497728	Nov 08, 2017 (151)
67	CSHL	ss3345016016	Oct 12, 2018 (152)
68	ILLUMINA	ss3628660240	Oct 12, 2018 (152)
69	ILLUMINA	ss3631894627	Oct 12, 2018 (152)
70	ILLUMINA	ss3633291920	Oct 12, 2018 (152)
71	ILLUMINA	ss3634008944	Oct 12, 2018 (152)
72	ILLUMINA	ss3634895708	Oct 12, 2018 (152)
73	ILLUMINA	ss3635692897	Oct 12, 2018 (152)
74	ILLUMINA	ss3636590539	Oct 12, 2018 (152)
75	ILLUMINA	ss3637445257	Oct 12, 2018 (152)
76	ILLUMINA	ss3638414881	Oct 12, 2018 (152)
77	ILLUMINA	ss3640603009	Oct 12, 2018 (152)
78	ILLUMINA	ss3641144944	Oct 12, 2018 (152)
79	ILLUMINA	ss3641441511	Oct 12, 2018 (152)
80	ILLUMINA	ss3643371889	Oct 12, 2018 (152)
81	OMUKHERJEE_ADBS	ss3646286976	Oct 12, 2018 (152)
82	EGCUT_WGS	ss3660232062	Jul 13, 2019 (153)
83	EVA_DECODE	ss3709225747	Jul 13, 2019 (153)
84	ACPOP	ss3729882804	Jul 13, 2019 (153)
85	ILLUMINA	ss3745195480	Jul 13, 2019 (153)
86	EVA	ss3760028685	Jul 13, 2019 (153)
87	ILLUMINA	ss3772691128	Jul 13, 2019 (153)
88	PACBIO	ss3784313076	Jul 13, 2019 (153)
89	PACBIO	ss3789828841	Jul 13, 2019 (153)
90	PACBIO	ss3794702800	Jul 13, 2019 (153)
91	KHV_HUMAN_GENOMES	ss3803164765	Jul 13, 2019 (153)
92	EVA	ss3823924532	Apr 25, 2020 (154)
93	EVA	ss3825635003	Apr 25, 2020 (154)
94	EVA	ss3827806732	Apr 25, 2020 (154)
95	SGDP_PRJ	ss3855838432	Apr 25, 2020 (154)
96	KRGDB	ss3901696227	Apr 25, 2020 (154)
97	KOGIC	ss3951265325	Apr 25, 2020 (154)
98	FSA-LAB	ss3984252224	Apr 26, 2021 (155)
99	FSA-LAB	ss3984252225	Apr 26, 2021 (155)
100	EVA	ss3986023307	Apr 26, 2021 (155)
101	EVA	ss3986241742	Apr 26, 2021 (155)
102	EVA	ss4017080747	Apr 26, 2021 (155)
103	GNOMAD	ss4071097969	Apr 26, 2021 (155)
104	TOPMED	ss4564626720	Apr 26, 2021 (155)
105	TOMMO_GENOMICS	ss5159154472	Apr 26, 2021 (155)
106	EVA	ss5236997426	Apr 26, 2021 (155)
107	1000G_HIGH_COVERAGE	ss5254076519	Oct 12, 2022 (156)
108	EVA	ss5314855585	Oct 12, 2022 (156)
109	EVA	ss5339794140	Oct 12, 2022 (156)
110	HUGCELL_USP	ss5453467596	Oct 12, 2022 (156)
111	EVA	ss5506992062	Oct 12, 2022 (156)
112	1000G_HIGH_COVERAGE	ss5532440144	Oct 12, 2022 (156)
113	EVA	ss5624128666	Oct 12, 2022 (156)
114	SANFORD_IMAGENETICS	ss5632123085	Oct 12, 2022 (156)
115	TOMMO_GENOMICS	ss5690818979	Oct 12, 2022 (156)
116	EVA	ss5799578072	Oct 12, 2022 (156)
117	YY_MCH	ss5803734967	Oct 12, 2022 (156)
118	EVA	ss5825750715	Oct 12, 2022 (156)
119	EVA	ss5848584275	Oct 12, 2022 (156)
120	EVA	ss5853609494	Oct 12, 2022 (156)
121	EVA	ss5868822851	Oct 12, 2022 (156)
122	EVA	ss5936521154	Oct 12, 2022 (156)
123	EVA	ss5960416414	Oct 12, 2022 (156)
124	1000Genomes	NC_000003.11 - 53259850	Oct 12, 2018 (152)
125	1000Genomes_30x	NC_000003.12 - 53225834	Oct 12, 2022 (156)
126	The Avon Longitudinal Study of Parents and Children	NC_000003.11 - 53259850	Oct 12, 2018 (152)
127	Genetic variation in the Estonian population	NC_000003.11 - 53259850	Oct 12, 2018 (152)
128	ExAC	NC_000003.11 - 53259850	Oct 12, 2018 (152)
129	FINRISK	NC_000003.11 - 53259850	Apr 25, 2020 (154)
130	The Danish reference pan genome	NC_000003.11 - 53259850	Apr 25, 2020 (154)
131	gnomAD - Genomes	NC_000003.12 - 53225834	Apr 26, 2021 (155)
132	gnomAD - Exomes	NC_000003.11 - 53259850	Jul 13, 2019 (153)
133	GO Exome Sequencing Project	NC_000003.11 - 53259850	Oct 12, 2018 (152)
134	Genome of the Netherlands Release 5	NC_000003.11 - 53259850	Apr 25, 2020 (154)
135	HapMap	NC_000003.12 - 53225834	Apr 25, 2020 (154)
136	KOREAN population from KRGDB	NC_000003.11 - 53259850	Apr 25, 2020 (154)
137	Korean Genome Project	NC_000003.12 - 53225834	Apr 25, 2020 (154)
138	Medical Genome Project healthy controls from Spanish population	NC_000003.11 - 53259850	Apr 25, 2020 (154)
139	Northern Sweden	NC_000003.11 - 53259850	Jul 13, 2019 (153)
140	Qatari	NC_000003.11 - 53259850	Apr 25, 2020 (154)
141	SGDP_PRJ	NC_000003.11 - 53259850	Apr 25, 2020 (154)
142	Siberian	NC_000003.11 - 53259850	Apr 25, 2020 (154)
143	8.3KJPN	NC_000003.11 - 53259850	Apr 26, 2021 (155)
144	14KJPN	NC_000003.12 - 53225834	Oct 12, 2022 (156)
145	TopMed	NC_000003.12 - 53225834	Apr 26, 2021 (155)
146	UK 10K study - Twins	NC_000003.11 - 53259850	Oct 12, 2018 (152)
147	A Vietnamese Genetic Variation Database	NC_000003.11 - 53259850	Jul 13, 2019 (153)
148	ALFA	NC_000003.12 - 53225834	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs1051902	Oct 23, 2000 (87)
rs3192289	Jul 03, 2002 (106)
rs3736152	Oct 08, 2002 (108)
rs17849584	Mar 10, 2006 (126)
rs17850587	Mar 10, 2006 (126)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss253089513, ss277123755, ss480764128, ss491836138, ss1588058208, ss1712575195, ss3643371889	NC_000003.10:53234889:C:T	NC_000003.12:53225833:C:T	(self)
15178689, 8441627, 5970310, 6986311, 24751, 6125708, 2913534, 382856, 3701462, 8873621, 136212, 3167669, 3868586, 7855412, 2062412, 17123779, 8441627, 1833211, ss220134407, ss231818847, ss239233068, ss342135539, ss480779949, ss481673778, ss485176782, ss489884960, ss537166400, ss556611623, ss650289727, ss778517022, ss783034568, ss783994144, ss832292220, ss833973365, ss974448477, ss978586841, ss1067452011, ss1070404151, ss1303991109, ss1429418305, ss1579960769, ss1584028290, ss1607062193, ss1650056226, ss1687058577, ss1711019673, ss1752475310, ss1799271709, ss1921826656, ss2021472378, ss2149546058, ss2625234573, ss2633948526, ss2704919382, ss2733834329, ss2747031130, ss2792942364, ss2992310215, ss3345016016, ss3628660240, ss3631894627, ss3633291920, ss3634008944, ss3634895708, ss3635692897, ss3636590539, ss3637445257, ss3638414881, ss3640603009, ss3641144944, ss3641441511, ss3646286976, ss3660232062, ss3729882804, ss3745195480, ss3760028685, ss3772691128, ss3784313076, ss3789828841, ss3794702800, ss3823924532, ss3825635003, ss3827806732, ss3855838432, ss3901696227, ss3984252224, ss3984252225, ss3986023307, ss3986241742, ss4017080747, ss5159154472, ss5314855585, ss5339794140, ss5506992062, ss5624128666, ss5632123085, ss5799578072, ss5825750715, ss5848584275, ss5936521154, ss5960416414	NC_000003.11:53259849:C:T	NC_000003.12:53225833:C:T	(self)
19966079, 107767487, 2358419, 7643326, 24656083, 402004275, 8682356587, ss2251555427, ss3024497728, ss3709225747, ss3803164765, ss3951265325, ss4071097969, ss4564626720, ss5236997426, ss5254076519, ss5453467596, ss5532440144, ss5690818979, ss5803734967, ss5853609494, ss5868822851	NC_000003.12:53225833:C:T	NC_000003.12:53225833:C:T	(self)
ss3194, ss5435, ss8894, ss1527812, ss3176739, ss4417789, ss4922150, ss16260955, ss23273682, ss28503886, ss28504889, ss48407008, ss65742281, ss74878691, ss104796530, ss119337225, ss160614851, ss173571035	NT_022517.18:53199849:C:T	NC_000003.12:53225833:C:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs3163

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs3163