Name: rs3925024
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs3925024

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr9:4080699 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: T>C
Variation Type: SNV Single Nucleotide Variation
Frequency: C=0.228276 (73271/320976, ALFA)
C=0.300529 (79547/264690, TOPMED)
C=0.230485 (47267/205076, GENOGRAPHIC) (+ 23 more)
C=0.288221 (40344/139976, GnomAD)
C=0.35703 (27800/77864, PAGE_STUDY)
C=0.25816 (7295/28258, 14KJPN)
C=0.26008 (4359/16760, 8.3KJPN)
C=0.3267 (2092/6404, 1000G_30x)
C=0.3177 (1591/5008, 1000G)
C=0.1879 (842/4480, Estonian)
C=0.2164 (834/3854, ALSPAC)
C=0.2260 (838/3708, TWINSUK)
C=0.2710 (794/2930, KOREAN)
C=0.3007 (626/2082, HGDP_Stanford)
C=0.3413 (645/1890, HapMap)
C=0.2271 (258/1136, Daghestan)
C=0.196 (196/998, GoNL)
C=0.297 (234/788, PRJEB37584)
C=0.431 (270/626, Chileans)
C=0.148 (89/600, NorthernSweden)
T=0.370 (111/300, SGDP_PRJ)
C=0.204 (44/216, Qatari)
C=0.347 (75/216, Vietnamese)
C=0.13 (6/46, Ancient Sardinia)
C=0.35 (14/40, GENOME_DK)
T=0.38 (6/16, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: GLIS3 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	326104	T=0.771018	C=0.228982
European	Sub	282530	T=0.786444	C=0.213556
African	Sub	12840	T=0.60093	C=0.39907
African Others	Sub	468	T=0.556	C=0.444
African American	Sub	12372	T=0.60265	C=0.39735
Asian	Sub	3982	T=0.7190	C=0.2810
East Asian	Sub	3204	T=0.7285	C=0.2715
Other Asian	Sub	778	T=0.680	C=0.320
Latin American 1	Sub	1280	T=0.6680	C=0.3320
Latin American 2	Sub	9380	T=0.6171	C=0.3829
South Asian	Sub	5236	T=0.7979	C=0.2021
Other	Sub	10856	T=0.72200	C=0.27800

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
Allele Frequency Aggregator	Total	Global	320976	T=0.771724	C=0.228276
Allele Frequency Aggregator	European	Sub	279362	T=0.786521	C=0.213479
Allele Frequency Aggregator	African	Sub	11698	T=0.60027	C=0.39973
Allele Frequency Aggregator	Other	Sub	10038	T=0.72475	C=0.27525
Allele Frequency Aggregator	Latin American 2	Sub	9380	T=0.6171	C=0.3829
Allele Frequency Aggregator	South Asian	Sub	5236	T=0.7979	C=0.2021
Allele Frequency Aggregator	Asian	Sub	3982	T=0.7190	C=0.2810
Allele Frequency Aggregator	Latin American 1	Sub	1280	T=0.6680	C=0.3320
TopMed	Global	Study-wide	264690	T=0.699471	C=0.300529
Genographic Project	Global	Study-wide	205076	T=0.769515	C=0.230485
gnomAD - Genomes	Global	Study-wide	139976	T=0.711779	C=0.288221
gnomAD - Genomes	European	Sub	75866	T=0.78521	C=0.21479
gnomAD - Genomes	African	Sub	41894	T=0.59760	C=0.40240
gnomAD - Genomes	American	Sub	13622	T=0.65108	C=0.34892
gnomAD - Genomes	Ashkenazi Jewish	Sub	3322	T=0.7468	C=0.2532
gnomAD - Genomes	East Asian	Sub	3122	T=0.6832	C=0.3168
gnomAD - Genomes	Other	Sub	2150	T=0.7172	C=0.2828
The PAGE Study	Global	Study-wide	77864	T=0.64297	C=0.35703
The PAGE Study	AfricanAmerican	Sub	32170	T=0.60289	C=0.39711
The PAGE Study	Mexican	Sub	10698	T=0.61946	C=0.38054
The PAGE Study	Asian	Sub	8236	T=0.7297	C=0.2703
The PAGE Study	PuertoRican	Sub	7822	T=0.6589	C=0.3411
The PAGE Study	NativeHawaiian	Sub	4476	T=0.6709	C=0.3291
The PAGE Study	Cuban	Sub	4196	T=0.7367	C=0.2633
The PAGE Study	Dominican	Sub	3794	T=0.6776	C=0.3224
The PAGE Study	CentralAmerican	Sub	2420	T=0.5851	C=0.4149
The PAGE Study	SouthAmerican	Sub	1962	T=0.6600	C=0.3400
The PAGE Study	NativeAmerican	Sub	1246	T=0.6742	C=0.3258
The PAGE Study	SouthAsian	Sub	844	T=0.784	C=0.216
14KJPN	JAPANESE	Study-wide	28258	T=0.74184	C=0.25816
8.3KJPN	JAPANESE	Study-wide	16760	T=0.73992	C=0.26008
1000Genomes_30x	Global	Study-wide	6404	T=0.6733	C=0.3267
1000Genomes_30x	African	Sub	1786	T=0.5465	C=0.4535
1000Genomes_30x	Europe	Sub	1266	T=0.7804	C=0.2196
1000Genomes_30x	South Asian	Sub	1202	T=0.7770	C=0.2230
1000Genomes_30x	East Asian	Sub	1170	T=0.6974	C=0.3026
1000Genomes_30x	American	Sub	980	T=0.610	C=0.390
1000Genomes	Global	Study-wide	5008	T=0.6823	C=0.3177
1000Genomes	African	Sub	1322	T=0.5492	C=0.4508
1000Genomes	East Asian	Sub	1008	T=0.6984	C=0.3016
1000Genomes	Europe	Sub	1006	T=0.7773	C=0.2227
1000Genomes	South Asian	Sub	978	T=0.789	C=0.211
1000Genomes	American	Sub	694	T=0.624	C=0.376
Genetic variation in the Estonian population	Estonian	Study-wide	4480	T=0.8121	C=0.1879
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.7836	C=0.2164
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.7740	C=0.2260
KOREAN population from KRGDB	KOREAN	Study-wide	2930	T=0.7290	C=0.2710
HGDP-CEPH-db Supplement 1	Global	Study-wide	2082	T=0.6993	C=0.3007
HGDP-CEPH-db Supplement 1	Est_Asia	Sub	468	T=0.744	C=0.256
HGDP-CEPH-db Supplement 1	Central_South_Asia	Sub	414	T=0.761	C=0.239
HGDP-CEPH-db Supplement 1	Middle_Est	Sub	350	T=0.786	C=0.214
HGDP-CEPH-db Supplement 1	Europe	Sub	320	T=0.772	C=0.228
HGDP-CEPH-db Supplement 1	Africa	Sub	242	T=0.554	C=0.446
HGDP-CEPH-db Supplement 1	America	Sub	216	T=0.477	C=0.523
HGDP-CEPH-db Supplement 1	Oceania	Sub	72	T=0.47	C=0.53
HapMap	Global	Study-wide	1890	T=0.6587	C=0.3413
HapMap	American	Sub	770	T=0.717	C=0.283
HapMap	African	Sub	690	T=0.535	C=0.465
HapMap	Asian	Sub	254	T=0.705	C=0.295
HapMap	Europe	Sub	176	T=0.824	C=0.176
Genome-wide autozygosity in Daghestan	Global	Study-wide	1136	T=0.7729	C=0.2271
Genome-wide autozygosity in Daghestan	Daghestan	Sub	628	T=0.769	C=0.231
Genome-wide autozygosity in Daghestan	Near_East	Sub	144	T=0.722	C=0.278
Genome-wide autozygosity in Daghestan	Central Asia	Sub	122	T=0.762	C=0.238
Genome-wide autozygosity in Daghestan	Europe	Sub	108	T=0.824	C=0.176
Genome-wide autozygosity in Daghestan	South Asian	Sub	98	T=0.83	C=0.17
Genome-wide autozygosity in Daghestan	Caucasus	Sub	36	T=0.78	C=0.22
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	T=0.804	C=0.196
CNV burdens in cranial meningiomas	Global	Study-wide	788	T=0.703	C=0.297
CNV burdens in cranial meningiomas	CRM	Sub	788	T=0.703	C=0.297
Chileans	Chilean	Study-wide	626	T=0.569	C=0.431
Northern Sweden	ACPOP	Study-wide	600	T=0.852	C=0.148
SGDP_PRJ	Global	Study-wide	300	T=0.370	C=0.630
Qatari	Global	Study-wide	216	T=0.796	C=0.204
A Vietnamese Genetic Variation Database	Global	Study-wide	216	T=0.653	C=0.347
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	46	T=0.87	C=0.13
The Danish reference pan genome	Danish	Study-wide	40	T=0.65	C=0.35
Siberian	Global	Study-wide	16	T=0.38	C=0.62

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 9	NC_000009.12:g.4080699T>C
GRCh37.p13 chr 9	NC_000009.11:g.4080699T>C
GLIS3 RefSeqGene	NG_011782.2:g.224337A>G

Gene: GLIS3, GLIS family zinc finger 3 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
GLIS3 transcript variant 1	NM_001042413.2:c.1710+370… NM_001042413.2:c.1710+37069A>G	N/A	Intron Variant
GLIS3 transcript variant 2	NM_152629.4:c.1245+37069A… NM_152629.4:c.1245+37069A>G	N/A	Intron Variant
GLIS3 transcript variant X5	XM_005251386.5:c.1245+370… XM_005251386.5:c.1245+37069A>G	N/A	Intron Variant
GLIS3 transcript variant X1	XM_011517763.3:c.1710+370… XM_011517763.3:c.1710+37069A>G	N/A	Intron Variant
GLIS3 transcript variant X2	XM_011517764.3:c.1710+370… XM_011517764.3:c.1710+37069A>G	N/A	Intron Variant
GLIS3 transcript variant X7	XM_011517766.3:c.1245+370… XM_011517766.3:c.1245+37069A>G	N/A	Intron Variant
GLIS3 transcript variant X6	XM_017014361.2:c.1245+370… XM_017014361.2:c.1245+37069A>G	N/A	Intron Variant
GLIS3 transcript variant X3	XM_047422889.1:c.1710+370… XM_047422889.1:c.1710+37069A>G	N/A	Intron Variant
GLIS3 transcript variant X4	XM_047422890.1:c.1455+370… XM_047422890.1:c.1455+37069A>G	N/A	Intron Variant
GLIS3 transcript variant X10	XM_047422892.1:c.1711-261… XM_047422892.1:c.1711-26186A>G	N/A	Intron Variant
GLIS3 transcript variant X8	XM_047422891.1:c.	N/A	Genic Downstream Transcript Variant
GLIS3 transcript variant X11	XM_047422893.1:c.	N/A	Genic Downstream Transcript Variant
GLIS3 transcript variant X9	XR_007061257.1:n.	N/A	Genic Downstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	T=	C
GRCh38.p14 chr 9	NC_000009.12:g.4080699=	NC_000009.12:g.4080699T>C
GRCh37.p13 chr 9	NC_000009.11:g.4080699=	NC_000009.11:g.4080699T>C
GLIS3 RefSeqGene	NG_011782.2:g.224337=	NG_011782.2:g.224337A>G
GLIS3 transcript variant 1	NM_001042413.1:c.1710+37069=	NM_001042413.1:c.1710+37069A>G
GLIS3 transcript variant 1	NM_001042413.2:c.1710+37069=	NM_001042413.2:c.1710+37069A>G
GLIS3 transcript variant 2	NM_152629.3:c.1245+37069=	NM_152629.3:c.1245+37069A>G
GLIS3 transcript variant 2	NM_152629.4:c.1245+37069=	NM_152629.4:c.1245+37069A>G
GLIS3 transcript variant X1	XM_005251386.1:c.1245+37069=	XM_005251386.1:c.1245+37069A>G
GLIS3 transcript variant X5	XM_005251386.5:c.1245+37069=	XM_005251386.5:c.1245+37069A>G
GLIS3 transcript variant X2	XM_005251387.1:c.1044+37069=	XM_005251387.1:c.1044+37069A>G
GLIS3 transcript variant X3	XM_005251388.1:c.1044+37069=	XM_005251388.1:c.1044+37069A>G
GLIS3 transcript variant X4	XM_005251389.1:c.1711-26186=	XM_005251389.1:c.1711-26186A>G
GLIS3 transcript variant X1	XM_011517763.3:c.1710+37069=	XM_011517763.3:c.1710+37069A>G
GLIS3 transcript variant X2	XM_011517764.3:c.1710+37069=	XM_011517764.3:c.1710+37069A>G
GLIS3 transcript variant X7	XM_011517766.3:c.1245+37069=	XM_011517766.3:c.1245+37069A>G
GLIS3 transcript variant X6	XM_017014361.2:c.1245+37069=	XM_017014361.2:c.1245+37069A>G
GLIS3 transcript variant X3	XM_047422889.1:c.1710+37069=	XM_047422889.1:c.1710+37069A>G
GLIS3 transcript variant X4	XM_047422890.1:c.1455+37069=	XM_047422890.1:c.1455+37069A>G
GLIS3 transcript variant X10	XM_047422892.1:c.1711-26186=	XM_047422892.1:c.1711-26186A>G

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

148 SubSNP, 26 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	TSC-CSHL	ss5156326	Oct 10, 2002 (108)
2	SC_JCM	ss5758531	Feb 20, 2003 (111)
3	SC_SNP	ss15693738	Feb 27, 2004 (120)
4	SSAHASNP	ss22789467	Apr 05, 2004 (121)
5	PERLEGEN	ss23767074	Sep 20, 2004 (123)
6	ABI	ss43879779	Mar 15, 2006 (126)
7	AFFY	ss66037664	Nov 30, 2006 (127)
8	ILLUMINA	ss66810559	Nov 30, 2006 (127)
9	ILLUMINA	ss67311655	Nov 30, 2006 (127)
10	ILLUMINA	ss67717523	Nov 30, 2006 (127)
11	PERLEGEN	ss69279652	May 17, 2007 (127)
12	ILLUMINA	ss70790310	May 24, 2008 (130)
13	ILLUMINA	ss71367710	May 17, 2007 (127)
14	ILLUMINA	ss75833434	Dec 06, 2007 (129)
15	AFFY	ss75928038	Dec 06, 2007 (129)
16	ILLUMINA	ss79173135	Dec 15, 2007 (130)
17	HGSV	ss84200190	Dec 15, 2007 (130)
18	KRIBB_YJKIM	ss84217757	Dec 15, 2007 (130)
19	HUMANGENOME_JCVI	ss97701904	Feb 05, 2009 (130)
20	1000GENOMES	ss108536398	Jan 23, 2009 (130)
21	1000GENOMES	ss114043769	Jan 25, 2009 (130)
22	ILLUMINA	ss122257750	Dec 01, 2009 (131)
23	ENSEMBL	ss134138906	Dec 01, 2009 (131)
24	ILLUMINA	ss154278454	Dec 01, 2009 (131)
25	GMI	ss157102867	Dec 01, 2009 (131)
26	ILLUMINA	ss159455090	Dec 01, 2009 (131)
27	ILLUMINA	ss160655637	Dec 01, 2009 (131)
28	COMPLETE_GENOMICS	ss164340960	Jul 04, 2010 (132)
29	COMPLETE_GENOMICS	ss166051349	Jul 04, 2010 (132)
30	AFFY	ss169240295	Jul 04, 2010 (132)
31	ILLUMINA	ss171716227	Jul 04, 2010 (132)
32	ILLUMINA	ss173674632	Jul 04, 2010 (132)
33	BUSHMAN	ss200011139	Jul 04, 2010 (132)
34	1000GENOMES	ss224085670	Jul 14, 2010 (132)
35	1000GENOMES	ss234699956	Jul 15, 2010 (132)
36	1000GENOMES	ss241498846	Jul 15, 2010 (132)
37	BL	ss254000779	May 09, 2011 (134)
38	GMI	ss280076868	May 04, 2012 (137)
39	PJP	ss294274690	May 09, 2011 (134)
40	ILLUMINA	ss480876128	May 04, 2012 (137)
41	ILLUMINA	ss480894824	May 04, 2012 (137)
42	ILLUMINA	ss481837206	Sep 08, 2015 (146)
43	ILLUMINA	ss485233159	May 04, 2012 (137)
44	ILLUMINA	ss537209568	Sep 08, 2015 (146)
45	TISHKOFF	ss561193720	Apr 25, 2013 (138)
46	SSMP	ss655623133	Apr 25, 2013 (138)
47	ILLUMINA	ss778900872	Sep 08, 2015 (146)
48	ILLUMINA	ss783062514	Sep 08, 2015 (146)
49	ILLUMINA	ss784020572	Sep 08, 2015 (146)
50	ILLUMINA	ss825503653	Jul 19, 2016 (147)
51	ILLUMINA	ss832320501	Sep 08, 2015 (146)
52	ILLUMINA	ss832966613	Jul 13, 2019 (153)
53	ILLUMINA	ss834362124	Sep 08, 2015 (146)
54	EVA-GONL	ss986242192	Aug 21, 2014 (142)
55	JMKIDD_LAB	ss1076058079	Aug 21, 2014 (142)
56	1000GENOMES	ss1332632010	Aug 21, 2014 (142)
57	HAMMER_LAB	ss1397545115	Sep 08, 2015 (146)
58	DDI	ss1431729253	Apr 01, 2015 (144)
59	EVA_GENOME_DK	ss1582958984	Apr 01, 2015 (144)
60	EVA_DECODE	ss1595866017	Apr 01, 2015 (144)
61	EVA_UK10K_ALSPAC	ss1622112671	Apr 01, 2015 (144)
62	EVA_UK10K_TWINSUK	ss1665106704	Apr 01, 2015 (144)
63	EVA_SVP	ss1713085516	Apr 01, 2015 (144)
64	ILLUMINA	ss1752778412	Sep 08, 2015 (146)
65	HAMMER_LAB	ss1805849157	Sep 08, 2015 (146)
66	WEILL_CORNELL_DGM	ss1929521157	Feb 12, 2016 (147)
67	ILLUMINA	ss1946251738	Feb 12, 2016 (147)
68	ILLUMINA	ss1959161002	Feb 12, 2016 (147)
69	GENOMED	ss1971138507	Jul 19, 2016 (147)
70	JJLAB	ss2025467583	Sep 14, 2016 (149)
71	USC_VALOUEV	ss2153697989	Dec 20, 2016 (150)
72	HUMAN_LONGEVITY	ss2308847722	Dec 20, 2016 (150)
73	SYSTEMSBIOZJU	ss2627209712	Nov 08, 2017 (151)
74	ILLUMINA	ss2634828314	Nov 08, 2017 (151)
75	ILLUMINA	ss2635191393	Nov 08, 2017 (151)
76	GRF	ss2709493165	Nov 08, 2017 (151)
77	ILLUMINA	ss2711154815	Nov 08, 2017 (151)
78	GNOMAD	ss2874680401	Nov 08, 2017 (151)
79	AFFY	ss2985454318	Nov 08, 2017 (151)
80	AFFY	ss2986098122	Nov 08, 2017 (151)
81	SWEGEN	ss3004282344	Nov 08, 2017 (151)
82	ILLUMINA	ss3022902767	Nov 08, 2017 (151)
83	BIOINF_KMB_FNS_UNIBA	ss3026522008	Nov 08, 2017 (151)
84	CSHL	ss3348492436	Nov 08, 2017 (151)
85	ILLUMINA	ss3625977846	Oct 12, 2018 (152)
86	ILLUMINA	ss3630199110	Oct 12, 2018 (152)
87	ILLUMINA	ss3632722815	Oct 12, 2018 (152)
88	ILLUMINA	ss3633522560	Oct 12, 2018 (152)
89	ILLUMINA	ss3634250385	Oct 12, 2018 (152)
90	ILLUMINA	ss3635199761	Oct 12, 2018 (152)
91	ILLUMINA	ss3635928653	Oct 12, 2018 (152)
92	ILLUMINA	ss3636942945	Oct 12, 2018 (152)
93	ILLUMINA	ss3637681925	Oct 12, 2018 (152)
94	ILLUMINA	ss3638796697	Oct 12, 2018 (152)
95	ILLUMINA	ss3639401969	Oct 12, 2018 (152)
96	ILLUMINA	ss3639732780	Oct 12, 2018 (152)
97	ILLUMINA	ss3640907052	Oct 12, 2018 (152)
98	ILLUMINA	ss3641238187	Oct 12, 2018 (152)
99	ILLUMINA	ss3641536026	Oct 12, 2018 (152)
100	ILLUMINA	ss3643724893	Oct 12, 2018 (152)
101	ILLUMINA	ss3644985015	Oct 12, 2018 (152)
102	URBANLAB	ss3649056360	Oct 12, 2018 (152)
103	ILLUMINA	ss3653451163	Oct 12, 2018 (152)
104	ILLUMINA	ss3654218283	Oct 12, 2018 (152)
105	EGCUT_WGS	ss3672013912	Jul 13, 2019 (153)
106	EVA_DECODE	ss3723351856	Jul 13, 2019 (153)
107	ILLUMINA	ss3726588414	Jul 13, 2019 (153)
108	ACPOP	ss3736253049	Jul 13, 2019 (153)
109	ILLUMINA	ss3744315176	Jul 13, 2019 (153)
110	ILLUMINA	ss3745499693	Jul 13, 2019 (153)
111	EVA	ss3768833028	Jul 13, 2019 (153)
112	PAGE_CC	ss3771482143	Jul 13, 2019 (153)
113	ILLUMINA	ss3772991821	Jul 13, 2019 (153)
114	PACBIO	ss3786330018	Jul 13, 2019 (153)
115	PACBIO	ss3791558044	Jul 13, 2019 (153)
116	PACBIO	ss3796439671	Jul 13, 2019 (153)
117	KHV_HUMAN_GENOMES	ss3811993214	Jul 13, 2019 (153)
118	EVA	ss3831503738	Apr 26, 2020 (154)
119	EVA	ss3839264969	Apr 26, 2020 (154)
120	EVA	ss3844726714	Apr 26, 2020 (154)
121	HGDP	ss3847937084	Apr 26, 2020 (154)
122	SGDP_PRJ	ss3871385724	Apr 26, 2020 (154)
123	KRGDB	ss3919013970	Apr 26, 2020 (154)
124	EVA	ss3984615086	Apr 26, 2021 (155)
125	EVA	ss3985401639	Apr 26, 2021 (155)
126	EVA	ss4017423301	Apr 26, 2021 (155)
127	TOPMED	ss4810200883	Apr 26, 2021 (155)
128	TOMMO_GENOMICS	ss5191790332	Apr 26, 2021 (155)
129	EVA	ss5237453702	Apr 26, 2021 (155)
130	1000G_HIGH_COVERAGE	ss5279568468	Oct 16, 2022 (156)
131	GENOGRAPHIC	ss5314531634	Oct 16, 2022 (156)
132	EVA	ss5315378722	Oct 16, 2022 (156)
133	EVA	ss5385621174	Oct 16, 2022 (156)
134	HUGCELL_USP	ss5475875905	Oct 16, 2022 (156)
135	EVA	ss5509607975	Oct 16, 2022 (156)
136	1000G_HIGH_COVERAGE	ss5571209796	Oct 16, 2022 (156)
137	SANFORD_IMAGENETICS	ss5624711494	Oct 16, 2022 (156)
138	SANFORD_IMAGENETICS	ss5646774717	Oct 16, 2022 (156)
139	TOMMO_GENOMICS	ss5734757827	Oct 16, 2022 (156)
140	EVA	ss5799774808	Oct 16, 2022 (156)
141	YY_MCH	ss5810287131	Oct 16, 2022 (156)
142	EVA	ss5828762796	Oct 16, 2022 (156)
143	EVA	ss5847350871	Oct 16, 2022 (156)
144	EVA	ss5848196728	Oct 16, 2022 (156)
145	EVA	ss5856643326	Oct 16, 2022 (156)
146	EVA	ss5915261235	Oct 16, 2022 (156)
147	EVA	ss5976038984	Oct 16, 2022 (156)
148	EVA	ss5979883925	Oct 16, 2022 (156)
149	1000Genomes	NC_000009.11 - 4080699	Oct 12, 2018 (152)
150	1000Genomes_30x	NC_000009.12 - 4080699	Oct 16, 2022 (156)
151	The Avon Longitudinal Study of Parents and Children	NC_000009.11 - 4080699	Oct 12, 2018 (152)
152	Chileans	NC_000009.11 - 4080699	Apr 26, 2020 (154)
153	Genome-wide autozygosity in Daghestan	NC_000009.10 - 4070699	Apr 26, 2020 (154)
154	Genetic variation in the Estonian population	NC_000009.11 - 4080699	Oct 12, 2018 (152)
155	Genographic Project	NC_000009.12 - 4080699	Oct 16, 2022 (156)
156	The Danish reference pan genome	NC_000009.11 - 4080699	Apr 26, 2020 (154)
157	gnomAD - Genomes	NC_000009.12 - 4080699	Apr 26, 2021 (155)
158	Genome of the Netherlands Release 5	NC_000009.11 - 4080699	Apr 26, 2020 (154)
159	HGDP-CEPH-db Supplement 1	NC_000009.10 - 4070699	Apr 26, 2020 (154)
160	HapMap	NC_000009.12 - 4080699	Apr 26, 2020 (154)
161	KOREAN population from KRGDB	NC_000009.11 - 4080699	Apr 26, 2020 (154)
162	Northern Sweden	NC_000009.11 - 4080699	Jul 13, 2019 (153)
163	The PAGE Study	NC_000009.12 - 4080699	Jul 13, 2019 (153)
164	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000009.11 - 4080699	Apr 26, 2021 (155)
165	CNV burdens in cranial meningiomas	NC_000009.11 - 4080699	Apr 26, 2021 (155)
166	Qatari	NC_000009.11 - 4080699	Apr 26, 2020 (154)
167	SGDP_PRJ	NC_000009.11 - 4080699	Apr 26, 2020 (154)
168	Siberian	NC_000009.11 - 4080699	Apr 26, 2020 (154)
169	8.3KJPN	NC_000009.11 - 4080699	Apr 26, 2021 (155)
170	14KJPN	NC_000009.12 - 4080699	Oct 16, 2022 (156)
171	TopMed	NC_000009.12 - 4080699	Apr 26, 2021 (155)
172	UK 10K study - Twins	NC_000009.11 - 4080699	Oct 12, 2018 (152)
173	A Vietnamese Genetic Variation Database	NC_000009.11 - 4080699	Jul 13, 2019 (153)
174	ALFA	NC_000009.12 - 4080699	Apr 26, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs58448368	May 24, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss84200190, ss3639401969, ss3639732780	NC_000009.9:4070698:T:C	NC_000009.12:4080698:T:C	(self)
518705, 614976, ss66037664, ss75928038, ss108536398, ss114043769, ss164340960, ss166051349, ss169240295, ss200011139, ss254000779, ss280076868, ss294274690, ss480876128, ss825503653, ss1397545115, ss1595866017, ss1713085516, ss2635191393, ss3643724893, ss3847937084	NC_000009.10:4070698:T:C	NC_000009.12:4080698:T:C	(self)
44852850, 24959426, 451931, 17752160, 9123921, 11131561, 26191364, 9537914, 627566, 164527, 11563087, 23402704, 6214343, 49759639, 24959426, 5541445, ss224085670, ss234699956, ss241498846, ss480894824, ss481837206, ss485233159, ss537209568, ss561193720, ss655623133, ss778900872, ss783062514, ss784020572, ss832320501, ss832966613, ss834362124, ss986242192, ss1076058079, ss1332632010, ss1431729253, ss1582958984, ss1622112671, ss1665106704, ss1752778412, ss1805849157, ss1929521157, ss1946251738, ss1959161002, ss1971138507, ss2025467583, ss2153697989, ss2627209712, ss2634828314, ss2709493165, ss2711154815, ss2874680401, ss2985454318, ss2986098122, ss3004282344, ss3022902767, ss3348492436, ss3625977846, ss3630199110, ss3632722815, ss3633522560, ss3634250385, ss3635199761, ss3635928653, ss3636942945, ss3637681925, ss3638796697, ss3640907052, ss3641238187, ss3641536026, ss3644985015, ss3653451163, ss3654218283, ss3672013912, ss3736253049, ss3744315176, ss3745499693, ss3768833028, ss3772991821, ss3786330018, ss3791558044, ss3796439671, ss3831503738, ss3839264969, ss3871385724, ss3919013970, ss3984615086, ss3985401639, ss4017423301, ss5191790332, ss5237453702, ss5315378722, ss5385621174, ss5509607975, ss5624711494, ss5646774717, ss5799774808, ss5828762796, ss5847350871, ss5848196728, ss5976038984, ss5979883925	NC_000009.11:4080698:T:C	NC_000009.12:4080698:T:C	(self)
58735731, 109115, 316187730, 3762499, 703612, 68594931, 647578444, 2313838697, ss2308847722, ss3026522008, ss3649056360, ss3723351856, ss3726588414, ss3771482143, ss3811993214, ss3844726714, ss4810200883, ss5279568468, ss5314531634, ss5475875905, ss5571209796, ss5734757827, ss5810287131, ss5856643326, ss5915261235	NC_000009.12:4080698:T:C	NC_000009.12:4080698:T:C	(self)
ss15693738, ss22789467	NT_008413.16:4070698:T:C	NC_000009.12:4080698:T:C	(self)
ss5156326, ss5758531, ss23767074, ss43879779, ss66810559, ss67311655, ss67717523, ss69279652, ss70790310, ss71367710, ss75833434, ss79173135, ss84217757, ss97701904, ss122257750, ss134138906, ss154278454, ss157102867, ss159455090, ss160655637, ss171716227, ss173674632	NT_008413.18:4070698:T:C	NC_000009.12:4080698:T:C	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs3925024

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs3925024