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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs7915

Current Build 156

Released September 21, 2022

Organism
Homo sapiens
Position
chr15:40814287 (GRCh38.p14) Help

The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.

Alleles
A>C / A>G / A>T
Variation Type
SNV Single Nucleotide Variation
Frequency
C=0.361671 (107132/296214, ALFA)
C=0.304114 (80496/264690, TOPMED)
C=0.371896 (76267/205076, GENOGRAPHIC) (+ 20 more)
C=0.29395 (22983/78186, PAGE_STUDY)
A=0.31016 (8764/28256, 14KJPN)
A=0.31259 (5239/16760, 8.3KJPN)
C=0.3332 (2134/6404, 1000G_30x)
C=0.3442 (1724/5008, 1000G)
C=0.2998 (1369/4566, GO-ESP)
C=0.2991 (1340/4480, Estonian)
A=0.3222 (944/2930, KOREAN)
C=0.3839 (800/2084, HGDP_Stanford)
C=0.3376 (638/1890, HapMap)
C=0.369 (368/998, GoNL)
A=0.312 (247/792, PRJEB37584)
C=0.323 (194/600, NorthernSweden)
C=0.099 (53/534, MGP)
A=0.348 (115/330, SGDP_PRJ)
C=0.370 (80/216, Qatari)
A=0.370 (80/216, Vietnamese)
C=0.40 (28/70, Ancient Sardinia)
C=0.35 (14/40, GENOME_DK)
A=0.31 (10/32, Siberian)
Clinical Significance
Not Reported in ClinVar
Gene : Consequence
ZFYVE19 : 3 Prime UTR Variant
Publications
1 citation
Genomic View
See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541
Population Group Sample Size Ref Allele Alt Allele
Total Global 301250 A=0.639223 C=0.360777, T=0.000000
European Sub 267726 A=0.630589 C=0.369411, T=0.000000
African Sub 11426 A=0.88167 C=0.11833, T=0.00000
African Others Sub 434 A=0.906 C=0.094, T=0.000
African American Sub 10992 A=0.88073 C=0.11927, T=0.00000
Asian Sub 3832 A=0.3894 C=0.6106, T=0.0000
East Asian Sub 3108 A=0.3227 C=0.6773, T=0.0000
Other Asian Sub 724 A=0.675 C=0.325, T=0.000
Latin American 1 Sub 978 A=0.661 C=0.339, T=0.000
Latin American 2 Sub 2806 A=0.6949 C=0.3051, T=0.0000
South Asian Sub 5176 A=0.6679 C=0.3321, T=0.0000
Other Sub 9306 A=0.6579 C=0.3421, T=0.0000


Help

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download
Study Population Group Sample Size Ref Allele Alt Allele
Allele Frequency Aggregator Total Global 296214 A=0.638329 C=0.361671, T=0.000000
Allele Frequency Aggregator European Sub 264632 A=0.630483 C=0.369517, T=0.000000
Allele Frequency Aggregator African Sub 10284 A=0.88419 C=0.11581, T=0.00000
Allele Frequency Aggregator Other Sub 8506 A=0.6581 C=0.3419, T=0.0000
Allele Frequency Aggregator South Asian Sub 5176 A=0.6679 C=0.3321, T=0.0000
Allele Frequency Aggregator Asian Sub 3832 A=0.3894 C=0.6106, T=0.0000
Allele Frequency Aggregator Latin American 2 Sub 2806 A=0.6949 C=0.3051, T=0.0000
Allele Frequency Aggregator Latin American 1 Sub 978 A=0.661 C=0.339, T=0.000
TopMed Global Study-wide 264690 A=0.695886 C=0.304114
Genographic Project Global Study-wide 205076 A=0.628104 C=0.371896, T=0.000000
The PAGE Study Global Study-wide 78186 A=0.70605 C=0.29395
The PAGE Study AfricanAmerican Sub 32342 A=0.85462 C=0.14538
The PAGE Study Mexican Sub 10750 A=0.67740 C=0.32260
The PAGE Study Asian Sub 8226 A=0.3270 C=0.6730
The PAGE Study PuertoRican Sub 7868 A=0.6942 C=0.3058
The PAGE Study NativeHawaiian Sub 4506 A=0.5315 C=0.4685
The PAGE Study Cuban Sub 4194 A=0.6111 C=0.3889
The PAGE Study Dominican Sub 3802 A=0.7128 C=0.2872
The PAGE Study CentralAmerican Sub 2430 A=0.7082 C=0.2918
The PAGE Study SouthAmerican Sub 1968 A=0.6855 C=0.3145
The PAGE Study NativeAmerican Sub 1254 A=0.6906 C=0.3094
The PAGE Study SouthAsian Sub 846 A=0.621 C=0.379
14KJPN JAPANESE Study-wide 28256 A=0.31016 C=0.68984
8.3KJPN JAPANESE Study-wide 16760 A=0.31259 C=0.68741
1000Genomes_30x Global Study-wide 6404 A=0.6668 C=0.3332
1000Genomes_30x African Sub 1786 A=0.9071 C=0.0929
1000Genomes_30x Europe Sub 1266 A=0.6327 C=0.3673
1000Genomes_30x South Asian Sub 1202 A=0.6231 C=0.3769
1000Genomes_30x East Asian Sub 1170 A=0.3564 C=0.6436
1000Genomes_30x American Sub 980 A=0.697 C=0.303
1000Genomes Global Study-wide 5008 A=0.6558 C=0.3442
1000Genomes African Sub 1322 A=0.9054 C=0.0946
1000Genomes East Asian Sub 1008 A=0.3492 C=0.6508
1000Genomes Europe Sub 1006 A=0.6282 C=0.3718
1000Genomes South Asian Sub 978 A=0.627 C=0.373
1000Genomes American Sub 694 A=0.706 C=0.294
GO Exome Sequencing Project Global Study-wide 4566 A=0.7002 C=0.2998
GO Exome Sequencing Project European American Sub 3182 A=0.6307 C=0.3693
GO Exome Sequencing Project African American Sub 1384 A=0.8598 C=0.1402
Genetic variation in the Estonian population Estonian Study-wide 4480 A=0.7009 C=0.2991
KOREAN population from KRGDB KOREAN Study-wide 2930 A=0.3222 C=0.6778, G=0.0000
HGDP-CEPH-db Supplement 1 Global Study-wide 2084 A=0.6161 C=0.3839
HGDP-CEPH-db Supplement 1 Est_Asia Sub 470 A=0.302 C=0.698
HGDP-CEPH-db Supplement 1 Central_South_Asia Sub 414 A=0.669 C=0.331
HGDP-CEPH-db Supplement 1 Middle_Est Sub 350 A=0.637 C=0.363
HGDP-CEPH-db Supplement 1 Europe Sub 320 A=0.581 C=0.419
HGDP-CEPH-db Supplement 1 Africa Sub 242 A=0.901 C=0.099
HGDP-CEPH-db Supplement 1 America Sub 216 A=0.806 C=0.194
HGDP-CEPH-db Supplement 1 Oceania Sub 72 A=0.89 C=0.11
HapMap Global Study-wide 1890 A=0.6624 C=0.3376
HapMap American Sub 770 A=0.613 C=0.387
HapMap African Sub 692 A=0.837 C=0.163
HapMap Asian Sub 254 A=0.370 C=0.630
HapMap Europe Sub 174 A=0.615 C=0.385
Genome of the Netherlands Release 5 Genome of the Netherlands Study-wide 998 A=0.631 C=0.369
CNV burdens in cranial meningiomas Global Study-wide 792 A=0.312 C=0.688
CNV burdens in cranial meningiomas CRM Sub 792 A=0.312 C=0.688
Northern Sweden ACPOP Study-wide 600 A=0.677 C=0.323
Medical Genome Project healthy controls from Spanish population Spanish controls Study-wide 534 A=0.901 C=0.099
SGDP_PRJ Global Study-wide 330 A=0.348 C=0.652
Qatari Global Study-wide 216 A=0.630 C=0.370
A Vietnamese Genetic Variation Database Global Study-wide 216 A=0.370 C=0.630
Ancient Sardinia genome-wide 1240k capture data generation and analysis Global Study-wide 70 A=0.60 C=0.40
The Danish reference pan genome Danish Study-wide 40 A=0.65 C=0.35
Siberian Global Study-wide 32 A=0.31 C=0.69
Help

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements
Sequence name Change
GRCh38.p14 chr 15 NC_000015.10:g.40814287A>C
GRCh38.p14 chr 15 NC_000015.10:g.40814287A>G
GRCh38.p14 chr 15 NC_000015.10:g.40814287A>T
GRCh37.p13 chr 15 NC_000015.9:g.41106485A>C
GRCh37.p13 chr 15 NC_000015.9:g.41106485A>G
GRCh37.p13 chr 15 NC_000015.9:g.41106485A>T
Gene: ZFYVE19, zinc finger FYVE-type containing 19 (plus strand)
Molecule type Change Amino acid[Codon] SO Term
ZFYVE19 transcript variant 1 NM_001077268.2:c.*61= N/A 3 Prime UTR Variant
ZFYVE19 transcript variant 3 NM_032850.5:c.*61= N/A 3 Prime UTR Variant
ZFYVE19 transcript variant 2 NM_001258420.2:c.*61= N/A 3 Prime UTR Variant
ZFYVE19 transcript variant 4 NM_001258421.2:c.*61= N/A 3 Prime UTR Variant
ZFYVE19 transcript variant X1 XM_024450092.2:c.*61= N/A 3 Prime UTR Variant
ZFYVE19 transcript variant X3 XM_017022684.3:c. N/A Genic Downstream Transcript Variant
ZFYVE19 transcript variant X2 XR_931925.4:n. N/A Genic Downstream Transcript Variant
Help

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar
Help

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement A= C G T
GRCh38.p14 chr 15 NC_000015.10:g.40814287= NC_000015.10:g.40814287A>C NC_000015.10:g.40814287A>G NC_000015.10:g.40814287A>T
GRCh37.p13 chr 15 NC_000015.9:g.41106485= NC_000015.9:g.41106485A>C NC_000015.9:g.41106485A>G NC_000015.9:g.41106485A>T
ZFYVE19 transcript variant 3 NM_032850.5:c.*61= NM_032850.5:c.*61A>C NM_032850.5:c.*61A>G NM_032850.5:c.*61A>T
ZFYVE19 transcript variant 3 NM_032850.4:c.*61= NM_032850.4:c.*61A>C NM_032850.4:c.*61A>G NM_032850.4:c.*61A>T
ZFYVE19 transcript variant 1 NM_001077268.2:c.*61= NM_001077268.2:c.*61A>C NM_001077268.2:c.*61A>G NM_001077268.2:c.*61A>T
ZFYVE19 transcript variant 1 NM_001077268.1:c.*61= NM_001077268.1:c.*61A>C NM_001077268.1:c.*61A>G NM_001077268.1:c.*61A>T
ZFYVE19 transcript variant 4 NM_001258421.2:c.*61= NM_001258421.2:c.*61A>C NM_001258421.2:c.*61A>G NM_001258421.2:c.*61A>T
ZFYVE19 transcript variant 4 NM_001258421.1:c.*61= NM_001258421.1:c.*61A>C NM_001258421.1:c.*61A>G NM_001258421.1:c.*61A>T
ZFYVE19 transcript variant 2 NM_001258420.2:c.*61= NM_001258420.2:c.*61A>C NM_001258420.2:c.*61A>G NM_001258420.2:c.*61A>T
ZFYVE19 transcript variant 2 NM_001258420.1:c.*61= NM_001258420.1:c.*61A>C NM_001258420.1:c.*61A>G NM_001258420.1:c.*61A>T
ZFYVE19 transcript variant X1 XM_024450092.2:c.*61= XM_024450092.2:c.*61A>C XM_024450092.2:c.*61A>G XM_024450092.2:c.*61A>T
ZFYVE19 transcript variant X1 XM_024450092.1:c.*61= XM_024450092.1:c.*61A>C XM_024450092.1:c.*61A>G XM_024450092.1:c.*61A>T
Help

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

151 SubSNP, 25 Frequency submissions
No Submitter Submission ID Date (Build)
1 CGAP-GAI ss9852 Sep 19, 2000 (52)
2 SC_JCM ss792805 Aug 11, 2000 (83)
3 LEE ss1517181 Oct 04, 2000 (86)
4 YUSUKE ss3233966 Sep 28, 2001 (100)
5 SC_JCM ss3438071 Sep 28, 2001 (100)
6 SC_JCM ss4137106 Nov 05, 2001 (101)
7 LEE ss4392561 May 29, 2002 (106)
8 LEE ss4409658 May 29, 2002 (106)
9 CGAP-GAI ss16249007 Feb 27, 2004 (120)
10 CSHL-HAPMAP ss20008477 Feb 27, 2004 (120)
11 SSAHASNP ss21253627 Apr 05, 2004 (121)
12 PERLEGEN ss24385598 Sep 20, 2004 (123)
13 ABI ss43744077 Mar 14, 2006 (126)
14 ILLUMINA ss65729637 Oct 16, 2006 (127)
15 ILLUMINA ss66660505 Dec 01, 2006 (127)
16 ILLUMINA ss67847326 Dec 01, 2006 (127)
17 ILLUMINA ss68001499 Dec 01, 2006 (127)
18 ILLUMINA ss70958187 May 25, 2008 (130)
19 ILLUMINA ss71566056 May 18, 2007 (127)
20 AFFY ss74805891 Aug 16, 2007 (128)
21 ILLUMINA ss75550655 Dec 06, 2007 (129)
22 ILLUMINA ss79274659 Dec 15, 2007 (130)
23 KRIBB_YJKIM ss83348191 Dec 15, 2007 (130)
24 BCMHGSC_JDW ss90134617 Mar 24, 2008 (129)
25 HUMANGENOME_JCVI ss96806435 Feb 05, 2009 (130)
26 BGI ss106424277 Feb 05, 2009 (130)
27 1000GENOMES ss108762146 Jan 23, 2009 (130)
28 ILLUMINA ss122862104 Dec 01, 2009 (131)
29 ENSEMBL ss132395423 Dec 01, 2009 (131)
30 ENSEMBL ss134254235 Dec 01, 2009 (131)
31 ILLUMINA ss154456100 Dec 01, 2009 (131)
32 ILLUMINA ss159630742 Dec 01, 2009 (131)
33 ILLUMINA ss160928544 Dec 01, 2009 (131)
34 ILLUMINA ss172368256 Jul 04, 2010 (132)
35 ILLUMINA ss174616320 Jul 04, 2010 (132)
36 BUSHMAN ss200755957 Jul 04, 2010 (132)
37 1000GENOMES ss211599464 Jul 14, 2010 (132)
38 1000GENOMES ss236754073 Jul 15, 2010 (132)
39 1000GENOMES ss243144888 Jul 15, 2010 (132)
40 GMI ss282227388 May 04, 2012 (137)
41 PJP ss291824846 May 09, 2011 (134)
42 ILLUMINA ss481716641 May 04, 2012 (137)
43 ILLUMINA ss481747998 May 04, 2012 (137)
44 ILLUMINA ss482714383 Sep 08, 2015 (146)
45 ILLUMINA ss485653055 May 04, 2012 (137)
46 ILLUMINA ss535748933 Sep 08, 2015 (146)
47 TISHKOFF ss564437184 Apr 25, 2013 (138)
48 SSMP ss660154907 Apr 25, 2013 (138)
49 NHLBI-ESP ss713220303 Apr 25, 2013 (138)
50 ILLUMINA ss778619545 Sep 08, 2015 (146)
51 ILLUMINA ss783272086 Sep 08, 2015 (146)
52 ILLUMINA ss784225270 Sep 08, 2015 (146)
53 ILLUMINA ss825605177 Apr 01, 2015 (144)
54 ILLUMINA ss832533129 Sep 08, 2015 (146)
55 ILLUMINA ss833141630 Jul 13, 2019 (153)
56 ILLUMINA ss834077036 Sep 08, 2015 (146)
57 EVA-GONL ss991711197 Aug 21, 2014 (142)
58 JMKIDD_LAB ss1080068219 Aug 21, 2014 (142)
59 1000GENOMES ss1353160421 Aug 21, 2014 (142)
60 DDI ss1427603324 Apr 01, 2015 (144)
61 EVA_GENOME_DK ss1577575563 Apr 01, 2015 (144)
62 EVA_DECODE ss1695724895 Apr 01, 2015 (144)
63 EVA_MGP ss1711393699 Apr 01, 2015 (144)
64 EVA_SVP ss1713484410 Apr 01, 2015 (144)
65 ILLUMINA ss1752158829 Sep 08, 2015 (146)
66 WEILL_CORNELL_DGM ss1935116630 Feb 12, 2016 (147)
67 ILLUMINA ss1946390785 Feb 12, 2016 (147)
68 ILLUMINA ss1959605314 Feb 12, 2016 (147)
69 JJLAB ss2028337901 Sep 14, 2016 (149)
70 USC_VALOUEV ss2156735672 Dec 20, 2016 (150)
71 HUMAN_LONGEVITY ss2206159936 Dec 20, 2016 (150)
72 SYSTEMSBIOZJU ss2628663030 Nov 08, 2017 (151)
73 ILLUMINA ss2633220227 Nov 08, 2017 (151)
74 GRF ss2701202519 Nov 08, 2017 (151)
75 ILLUMINA ss2710814283 Nov 08, 2017 (151)
76 GNOMAD ss2934011564 Nov 08, 2017 (151)
77 SWEGEN ss3013158769 Nov 08, 2017 (151)
78 ILLUMINA ss3021624853 Nov 08, 2017 (151)
79 BIOINF_KMB_FNS_UNIBA ss3027993061 Nov 08, 2017 (151)
80 CSHL ss3351083794 Nov 08, 2017 (151)
81 ILLUMINA ss3625670687 Oct 12, 2018 (152)
82 ILLUMINA ss3627343605 Oct 12, 2018 (152)
83 ILLUMINA ss3631213852 Oct 12, 2018 (152)
84 ILLUMINA ss3633094962 Oct 12, 2018 (152)
85 ILLUMINA ss3633799468 Oct 12, 2018 (152)
86 ILLUMINA ss3634602371 Oct 12, 2018 (152)
87 ILLUMINA ss3635488437 Oct 12, 2018 (152)
88 ILLUMINA ss3636292989 Oct 12, 2018 (152)
89 ILLUMINA ss3637239691 Oct 12, 2018 (152)
90 ILLUMINA ss3638080987 Oct 12, 2018 (152)
91 ILLUMINA ss3639054074 Oct 12, 2018 (152)
92 ILLUMINA ss3639532280 Oct 12, 2018 (152)
93 ILLUMINA ss3640309695 Oct 12, 2018 (152)
94 ILLUMINA ss3643065391 Oct 12, 2018 (152)
95 ILLUMINA ss3644643904 Oct 12, 2018 (152)
96 OMUKHERJEE_ADBS ss3646472784 Oct 12, 2018 (152)
97 URBANLAB ss3650339444 Oct 12, 2018 (152)
98 ILLUMINA ss3652025029 Oct 12, 2018 (152)
99 EGCUT_WGS ss3680304608 Jul 13, 2019 (153)
100 EVA_DECODE ss3697746848 Jul 13, 2019 (153)
101 ILLUMINA ss3725492215 Jul 13, 2019 (153)
102 ACPOP ss3740861842 Jul 13, 2019 (153)
103 ILLUMINA ss3744129946 Jul 13, 2019 (153)
104 ILLUMINA ss3744902920 Jul 13, 2019 (153)
105 EVA ss3752992733 Jul 13, 2019 (153)
106 PAGE_CC ss3771824333 Jul 13, 2019 (153)
107 ILLUMINA ss3772401603 Jul 13, 2019 (153)
108 PACBIO ss3787825529 Jul 13, 2019 (153)
109 PACBIO ss3792841340 Jul 13, 2019 (153)
110 PACBIO ss3797725812 Jul 13, 2019 (153)
111 KHV_HUMAN_GENOMES ss3818312187 Jul 13, 2019 (153)
112 EVA ss3824905526 Apr 27, 2020 (154)
113 EVA ss3834199150 Apr 27, 2020 (154)
114 EVA ss3840698579 Apr 27, 2020 (154)
115 EVA ss3846187167 Apr 27, 2020 (154)
116 HGDP ss3847521448 Apr 27, 2020 (154)
117 SGDP_PRJ ss3882760053 Apr 27, 2020 (154)
118 KRGDB ss3931897230 Apr 27, 2020 (154)
119 FSA-LAB ss3984070479 Apr 26, 2021 (155)
120 EVA ss3984700067 Apr 26, 2021 (155)
121 EVA ss3985712488 Apr 26, 2021 (155)
122 EVA ss3986066858 Apr 26, 2021 (155)
123 EVA ss3986643013 Apr 26, 2021 (155)
124 TOPMED ss4988649380 Apr 26, 2021 (155)
125 TOMMO_GENOMICS ss5215830852 Apr 26, 2021 (155)
126 EVA ss5237229424 Apr 26, 2021 (155)
127 1000G_HIGH_COVERAGE ss5298175653 Oct 16, 2022 (156)
128 GENOGRAPHIC ss5314564193 Oct 16, 2022 (156)
129 EVA ss5315778896 Oct 16, 2022 (156)
130 EVA ss5418748744 Oct 16, 2022 (156)
131 HUGCELL_USP ss5491934286 Oct 16, 2022 (156)
132 EVA ss5511405825 Oct 16, 2022 (156)
133 1000G_HIGH_COVERAGE ss5599443504 Oct 16, 2022 (156)
134 EVA ss5623963908 Oct 16, 2022 (156)
135 EVA ss5624051786 Oct 16, 2022 (156)
136 SANFORD_IMAGENETICS ss5624358680 Oct 16, 2022 (156)
137 SANFORD_IMAGENETICS ss5657360956 Oct 16, 2022 (156)
138 TOMMO_GENOMICS ss5769526537 Oct 16, 2022 (156)
139 EVA ss5799935887 Oct 16, 2022 (156)
140 EVA ss5800192515 Oct 16, 2022 (156)
141 YY_MCH ss5815268326 Oct 16, 2022 (156)
142 EVA ss5828102310 Oct 16, 2022 (156)
143 EVA ss5847447563 Oct 16, 2022 (156)
144 EVA ss5847739324 Oct 16, 2022 (156)
145 EVA ss5848398928 Oct 16, 2022 (156)
146 EVA ss5851262844 Oct 16, 2022 (156)
147 EVA ss5875573760 Oct 16, 2022 (156)
148 EVA ss5936559982 Oct 16, 2022 (156)
149 EVA ss5948757761 Oct 16, 2022 (156)
150 EVA ss5979458442 Oct 16, 2022 (156)
151 EVA ss5981288654 Oct 16, 2022 (156)
152 1000Genomes NC_000015.9 - 41106485 Oct 12, 2018 (152)
153 1000Genomes_30x NC_000015.10 - 40814287 Oct 16, 2022 (156)
154 Genetic variation in the Estonian population NC_000015.9 - 41106485 Oct 12, 2018 (152)
155 Genographic Project NC_000015.10 - 40814287 Oct 16, 2022 (156)
156 The Danish reference pan genome NC_000015.9 - 41106485 Apr 27, 2020 (154)
157 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 466790985 (NC_000015.10:40814286:A:C 41739/140148)
Row 466790986 (NC_000015.10:40814286:A:T 2/140178)

- Apr 26, 2021 (155)
158 gnomAD - Genomes

Submission ignored due to conflicting rows:
Row 466790985 (NC_000015.10:40814286:A:C 41739/140148)
Row 466790986 (NC_000015.10:40814286:A:T 2/140178)

- Apr 26, 2021 (155)
159 GO Exome Sequencing Project NC_000015.9 - 41106485 Oct 12, 2018 (152)
160 Genome of the Netherlands Release 5 NC_000015.9 - 41106485 Apr 27, 2020 (154)
161 HGDP-CEPH-db Supplement 1 NC_000015.8 - 38893777 Apr 27, 2020 (154)
162 HapMap NC_000015.10 - 40814287 Apr 27, 2020 (154)
163 KOREAN population from KRGDB NC_000015.9 - 41106485 Apr 27, 2020 (154)
164 Medical Genome Project healthy controls from Spanish population NC_000015.9 - 41106485 Apr 27, 2020 (154)
165 Northern Sweden NC_000015.9 - 41106485 Jul 13, 2019 (153)
166 The PAGE Study NC_000015.10 - 40814287 Jul 13, 2019 (153)
167 Ancient Sardinia genome-wide 1240k capture data generation and analysis NC_000015.9 - 41106485 Apr 26, 2021 (155)
168 CNV burdens in cranial meningiomas NC_000015.9 - 41106485 Apr 26, 2021 (155)
169 Qatari NC_000015.9 - 41106485 Apr 27, 2020 (154)
170 SGDP_PRJ NC_000015.9 - 41106485 Apr 27, 2020 (154)
171 Siberian NC_000015.9 - 41106485 Apr 27, 2020 (154)
172 8.3KJPN NC_000015.9 - 41106485 Apr 26, 2021 (155)
173 14KJPN NC_000015.10 - 40814287 Oct 16, 2022 (156)
174 TopMed NC_000015.10 - 40814287 Apr 26, 2021 (155)
175 A Vietnamese Genetic Variation Database NC_000015.9 - 41106485 Jul 13, 2019 (153)
176 ALFA NC_000015.10 - 40814287 Apr 26, 2021 (155)
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History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID History Updated (Build)
rs3169195 Jul 03, 2002 (106)
rs17657969 Oct 08, 2004 (123)
rs52814155 Sep 21, 2007 (128)
rs59485213 May 25, 2008 (130)
Added to this RefSNP Cluster:
Submission IDs Observation SPDI Canonical SPDI Source RSIDs
199340, ss90134617, ss108762146, ss200755957, ss211599464, ss282227388, ss291824846, ss481716641, ss825605177, ss1695724895, ss1713484410, ss3639054074, ss3639532280, ss3643065391, ss3847521448 NC_000015.8:38893776:A:C NC_000015.10:40814286:A:C (self)
66221133, 26042856, 3828593, 1362804, 16421937, 39074624, 509459, 14146707, 938415, 249589, 17158560, 34777033, 9252026, 73800159, 8179933, ss236754073, ss243144888, ss481747998, ss482714383, ss485653055, ss535748933, ss564437184, ss660154907, ss713220303, ss778619545, ss783272086, ss784225270, ss832533129, ss833141630, ss834077036, ss991711197, ss1080068219, ss1353160421, ss1427603324, ss1577575563, ss1711393699, ss1752158829, ss1935116630, ss1946390785, ss1959605314, ss2028337901, ss2156735672, ss2628663030, ss2633220227, ss2701202519, ss2710814283, ss2934011564, ss3013158769, ss3021624853, ss3351083794, ss3625670687, ss3627343605, ss3631213852, ss3633094962, ss3633799468, ss3634602371, ss3635488437, ss3636292989, ss3637239691, ss3638080987, ss3640309695, ss3644643904, ss3646472784, ss3652025029, ss3680304608, ss3740861842, ss3744129946, ss3744902920, ss3752992733, ss3772401603, ss3787825529, ss3792841340, ss3797725812, ss3824905526, ss3834199150, ss3840698579, ss3882760053, ss3931897230, ss3984070479, ss3984700067, ss3985712488, ss3986066858, ss3986643013, ss5215830852, ss5315778896, ss5418748744, ss5511405825, ss5623963908, ss5624051786, ss5624358680, ss5657360956, ss5799935887, ss5800192515, ss5828102310, ss5847447563, ss5847739324, ss5848398928, ss5936559982, ss5948757761, ss5979458442, ss5981288654 NC_000015.9:41106484:A:C NC_000015.10:40814286:A:C (self)
86969439, 43376, 1249419, 1045802, 103363641, 204195040, 8671540557, ss2206159936, ss3027993061, ss3650339444, ss3697746848, ss3725492215, ss3771824333, ss3818312187, ss3846187167, ss4988649380, ss5237229424, ss5298175653, ss5314564193, ss5491934286, ss5599443504, ss5769526537, ss5815268326, ss5851262844, ss5875573760 NC_000015.10:40814286:A:C NC_000015.10:40814286:A:C (self)
ss20008477, ss21253627 NT_010194.16:11897041:A:C NC_000015.10:40814286:A:C (self)
ss9852, ss792805, ss1517181, ss3233966, ss3438071, ss4137106, ss4392561, ss4409658, ss16249007, ss24385598, ss43744077, ss65729637, ss66660505, ss67847326, ss68001499, ss70958187, ss71566056, ss74805891, ss75550655, ss79274659, ss83348191, ss96806435, ss106424277, ss122862104, ss132395423, ss134254235, ss154456100, ss159630742, ss160928544, ss172368256, ss174616320 NT_010194.17:11897041:A:C NC_000015.10:40814286:A:C (self)
39074624, ss3931897230 NC_000015.9:41106484:A:G NC_000015.10:40814286:A:G (self)
ss2934011564 NC_000015.9:41106484:A:T NC_000015.10:40814286:A:T (self)
43376, 8671540557, ss5314564193 NC_000015.10:40814286:A:T NC_000015.10:40814286:A:T (self)
Help

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

1 citation for rs7915
PMID Title Author Year Journal
21403392 Association of HSP70 and its co-chaperones with Alzheimer's disease. Broer L et al. 2011 Journal of Alzheimer's disease
Help

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:
Select flank length:

Genomic regions, transcripts, and products
Top Help

NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Software version is: 2.0.1.post761+d5e8e07