Submitted SNP(ss) Details: ss105434867

Submitted SNP(ss) Details: ss105434867

Submitter
Handle	SNP500CANCER
Submitter SNP ID	HSD17B1-08
RefSNP(rs#)	rs610177
Submitted Batch ID	SNP500CANCER_07_03_08_A
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	HSD17B1-08

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	198
Population	N.D.

Allele
Observed Allele	T/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GAGGCGGGCT GGTCGGGCCT CTTGTCTCCG CAGTGTGTAA CGCWGGCCTG GGCCTGCTGG
 GGCCGCTGGA GGCGCTGGGG GAGGACGCCG TGGCCTCTGT GCTGGACGTG AATGTAGTAG
 GGACTGTGCG GATGCTGCAG GCCTTCCTGC CAGACATGAA GAGGCGCGGT TCGGGACGCG
 TGTTGGTGAC CGGGAGCGTG GGAGGATTGA TGGGTGAGTG GTAGGGAGTG GCCTCGGCAG
 CTCCAGATTC TTTGTGTGCG GAGCTGAGCC TTSAAGGCAG GTTCCGCGGG GDGGGTGGAG
 K
 GGGGTGCCGT CAGCTTGGAG GGGCACCGTC TGCCCGGGGA TGACCCCCYG GCCGCTGCGC
 CTCAGGAACC TCGTCTCCCC ACCTAAGGGC TGCCTTTCAA TGACGTTTAT TGCGCCAGCA
 AGTTCGCGCT CGAAGGCTTA TGCGAGAGTC TGGCGGTTCT GCTGCTGCCC TTTGGGGTCC
 AGTGAGTCAA CACCCCCGTT CCCCGAACCC TCTTAACTCT GACCTAGAGA YGCCGAGCAC
 CCTGTCCTGC GGGAGCCGCT CTGGGGCGAT CTCCCTGGCC CTCTCTGCCC GGCTCACATT

Submitted Frequency for ss105434867

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
HISP1 - MULTI-NATIONAL	46	G/T=0.52173901 T/T=0.34782600 G/G=0.13043500	SNP500CANCER_07_03_08_A	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/G=0.33333299 T/T=0.33333299 G/T=0.20833300 N/N=0.12500000	SNP500CANCER_07_03_08_A	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/T=0.61290300 G/G=0.22580600 T/T=0.16129000	SNP500CANCER_07_03_08_A	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/T=0.45833299 G/G=0.41666701 T/T=0.12500000	SNP500CANCER_07_03_08_A	SNP500CANCER
P1 - MULTI-NATIONAL	204	G/T=0.46078399 G/G=0.27451000 T/T=0.23529400 N/N=0.02941200	SNP500CANCER_07_03_08_A	SNP500CANCER

dbSNP summary of Genotypes for ss105434867

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	198	198	G=0.52020204	T=0.47979799	G/T=0.47474748 G/G=0.28282827 T/T=0.24242425	Pr(chiSq=0.237,df=1) =0.655	Genotype Freq.
CAUC1 - MULTI-NATIONAL	62	62	G=0.53225809	T=0.46774194	G/T=0.61290324 G/G=0.22580644 T/T=0.16129032	Pr(chiSq=1.653,df=1) =0.200	Genotype Freq.
AFR1 - MULTI-NATIONAL	42	42		T=0.50000000	G/G=0.38095239 T/T=0.38095239 G/T=0.23809524	Pr(chiSq=5.762,df=1) =0.020	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	T=0.60869563	G=0.39130434	G/T=0.52173913 T/T=0.34782609 G/G=0.13043478	Pr(chiSq=0.209,df=1) =0.655	Genotype Freq.
PAC1 - MULTI-NATIONAL	48	48	G=0.64583331	T=0.35416666	G/T=0.45833334 G/G=0.41666666 T/T=0.12500000	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss105434867

There is no individual genotype data for ss105434867.

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