NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss105434872           
Submitter
HandleSNP500CANCER
Submitter SNP IDHSD3B1-05
RefSNP(rs#)rs6205
Submitted Batch IDSNP500CANCER_07_03_08_A
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQUENCING
Ascertainment Samplesize198
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss105434872|allelePos=301|len=601|taxid=9606|alleles='T/C'|mol=Genomic
 CGACCCATGT ATATCTATGG GGAAGGAAGC CGATTCCTTT CTGCTAGTAT AAACGAGGCC
 CTGAACAACA ATGGGATCCT GTCAAGTGTT GGAAAGTTCT CCACTGTTAA CCCAGTCTAT
 GTTGGCAATG TGGCCTGGGC CCACATTCTG GCCTTGAGGG CCCTGCAGRA CCCYAAGAAG
 GCCCCAAGCA TCCGAGGACA GTTCTACTAT ATCTCAGATG ACACGCCTCA CCAAAGCTAT
 GATAACCTTA ATTACACCCT GAGCAAAGAG TTCGGCCTCC GCCTTGATTC CAGATGGAGC
 Y
 TTCCTTTATC CCTGATGTAT TGGATTGGCT TCCTGCTGGA AATAGTGAGC TTCCTACTCA
 GGCCAATTTA CACCTAYCGA CCRCCCTTCA ACCGCCACAT AGTCACATTG TCAAATAGCG
 TATTCACCTT CTCTTATAAG AAGGCTCAGC GAGATYTGGC RTATAAGCCA CTCTACAGCT
 GGGAGGAAGC CAAGCAGAAA ACGGTGGAGT GGGTTGGTTC CCTTGTGGAC CGGCACAAGG
 AGAMCCTGAA GTCCAAGACT CAGTGATTTA AGGATGACAG AGATGTGCAT GTGGGTATTG

  Submitted Frequency for ss105434872 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
HISP1
MULTI-NATIONAL
46T/T=0.82608700
C/T=0.17391300
SNP500CANCER_07_03_08_ASNP500CANCER
PAC1
MULTI-NATIONAL
48T/T=0.91666698
C/T=0.08333300
SNP500CANCER_07_03_08_ASNP500CANCER
CAUC1
MULTI-NATIONAL
62T/T=0.90322602
N/N=0.09677400
SNP500CANCER_07_03_08_ASNP500CANCER
AFR1
MULTI-NATIONAL
48C/T=0.41666701
T/T=0.37500000
C/C=0.20833300
SNP500CANCER_07_03_08_ASNP500CANCER
P1
MULTI-NATIONAL
204T/T=0.76470602
C/T=0.15686300
C/C=0.04902000
N/N=0.02941200
SNP500CANCER_07_03_08_ASNP500CANCER


  dbSNP summary of Genotypes for ss105434872 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
P1
MULTI-NATIONAL
198198T=0.86868685
C=0.13131313T/T=0.78787881
C/T=0.16161616
C/C=0.05050505
Pr(chiSq=8.418,df=1)
=0.005
Genotype
Freq.
AFR1
MULTI-NATIONAL
4848T=0.58333331
C=0.41666666C/T=0.41666666
T/T=0.37500000
C/C=0.20833333
Pr(chiSq=0.490,df=1)
=0.527
Genotype
Freq.
HISP1
MULTI-NATIONAL
4646T=0.91304350
C=0.08695652T/T=0.82608694
C/T=0.17391305
Pr(chiSq=0.035,df=1)
=1.000
Genotype
Freq.
PAC1
MULTI-NATIONAL
4848T=0.95833331
C=0.04166667T/T=0.91666669
C/T=0.08333334
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss105434872 back to top
There is no individual genotype data for ss105434872.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement