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Submitted SNP(ss) Details: ss105434873           
Submitter
HandleSNP500CANCER
Submitter SNP IDHSD3B1-06
RefSNP(rs#)rs6203
Submitted Batch IDSNP500CANCER_07_03_08_A
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodSEQUENCING
Ascertainment Samplesize204
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 10
Genotype Summarypopulation count: 10
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss105434873|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 AGGGCCCTGC AGRACCCYAA GAAGGCCCCA AGCATCCGAG GACAGTTCTA CTATATCTCA
 GATGACACGC CTCACCAAAG CTATGATAAC CTTAATTACA CCCTGAGCAA AGAGTTCGGC
 CTCCGCCTTG ATTCCAGATG GAGCYTTCCT TTATCCCTGA TGTATTGGAT TGGCTTCCTG
 CTGGAAATAG TGAGCTTCCT ACTCAGGCCA ATTTACACCT AYCGACCRCC CTTCAACCGC
 CACATAGTCA CATTGTCAAA TAGCGTATTC ACCTTCTCTT ATAAGAAGGC TCAGCGAGAT
 Y
 TGGCRTATAA GCCACTCTAC AGCTGGGAGG AAGCCAAGCA GAAAACGGTG GAGTGGGTTG
 GTTCCCTTGT GGACCGGCAC AAGGAGAMCC TGAAGTCCAA GACTCAGTGA TTTAAGGATG
 ACAGAGATGT GCATGTGGGT ATTGTTAGKA GATGTCATCA AGCTCCACCC TCCTGGCCTC
 ATACAGAAAG TGACAAGGGC ACAAGCTCAG GTCCTGCTGC CTCCCTTTCA TACAATGGCC
 AACTTATTGT ATTCCTCATG TCATCAAAAC CTGCGCAGTC ATTGGCCCAA CAAGAAGGTT

  Submitted Frequency for ss105434873 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
AFR3
- MULTI-NATIONAL 		152C/C=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
HISP3
- MULTI-NATIONAL 		98C/T=0.53061199
T/T=0.38775501
C/C=0.04081600
N/N=0.04081600
SNP500CANCER_07_03_08_BSNP500CANCER
PAC3
- MULTI-NATIONAL 		178C/T=0.46067399
T/T=0.29213500
C/C=0.23595500
N/N=0.01123600
SNP500CANCER_07_03_08_BSNP500CANCER
P3
- MULTI-NATIONAL 		560C/C=0.42857099
C/T=0.34642899
T/T=0.21071400
N/N=0.01428600
SNP500CANCER_07_03_08_BSNP500CANCER
CAUC3
- MULTI-NATIONAL 		132C/T=0.45454499
C/C=0.31818199
T/T=0.21212099
N/N=0.01515200
SNP500CANCER_07_03_08_BSNP500CANCER
P1
- MULTI-NATIONAL 		204C/C=0.43137300
C/T=0.40196100
T/T=0.16666700
SNP500CANCER_07_03_08_ASNP500CANCER
CAUC1
- MULTI-NATIONAL 		62C/C=0.45161301
C/T=0.45161301
T/T=0.09677400
SNP500CANCER_07_03_08_ASNP500CANCER
HISP1
- MULTI-NATIONAL 		46C/T=0.52173901
C/C=0.26087001
T/T=0.21739100
SNP500CANCER_07_03_08_ASNP500CANCER
PAC1
- MULTI-NATIONAL 		48C/T=0.37500000
T/T=0.37500000
C/C=0.25000000
SNP500CANCER_07_03_08_ASNP500CANCER
AFR1
- MULTI-NATIONAL 		48C/C=0.75000000
C/T=0.25000000
SNP500CANCER_07_03_08_ASNP500CANCER


  dbSNP summary of Genotypes for ss105434873 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
P1
- MULTI-NATIONAL 		204204C=0.63235295
T=0.36764705C/C=0.43137255
C/T=0.40196079
T/T=0.16666667
Pr(chiSq=1.873,df=1)
=0.200		Genotype
Freq.
CAUC1
- MULTI-NATIONAL 		6262C=0.67741936
T=0.32258064C/C=0.45161289
C/T=0.45161289
T/T=0.09677419
Pr(chiSq=0.034,df=1)
=1.000		Genotype
Freq.
AFR1
- MULTI-NATIONAL 		4848C=0.87500000
T=0.12500000C/C=0.75000000
C/T=0.25000000
Pr(chiSq=0.115,df=1)
=0.752		Genotype
Freq.
HISP1
- MULTI-NATIONAL 		4646C=0.52173913
T=0.47826087C/T=0.52173913
C/C=0.26086956
T/T=0.21739130
Pr(chiSq=0.048,df=1)
=1.000		Genotype
Freq.
PAC1
- MULTI-NATIONAL 		4848T=0.56250000
C=0.43750000C/T=0.37500000
T/T=0.37500000
C/C=0.25000000
Pr(chiSq=1.361,df=1)
=0.251		Genotype
Freq.
P3
- MULTI-NATIONAL 		552552C=0.61050725
T=0.38949275C/C=0.43478259
C/T=0.35144928
T/T=0.21376811
Pr(chiSq=18.802,df=1)
=0.001		Genotype
Freq.
CAUC3
- MULTI-NATIONAL 		130130C=0.55384618
T=0.44615385C/T=0.46153846
C/C=0.32307693
T/T=0.21538462
Pr(chiSq=0.284,df=1)
=0.655		Genotype
Freq.
HISP3
- MULTI-NATIONAL 		9494T=0.68085104
C=0.31914893C/T=0.55319148
T/T=0.40425533
C/C=0.04255319
Pr(chiSq=3.501,df=1)
=0.100		Genotype
Freq.
PAC3
- MULTI-NATIONAL 		176176T=0.52840906
C=0.47159091C/T=0.46590909
T/T=0.29545453
C/C=0.23863636
Pr(chiSq=0.374,df=1)
=0.584		Genotype
Freq.

  Submitted individual genotype for ss105434873 back to top
There is no individual genotype data for ss105434873.

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