Submitted SNP(ss) Details: ss105437732

Submitted SNP(ss) Details: ss105437732

Submitter
Handle	SNP500CANCER
Submitter SNP ID	LRIG3-02
RefSNP(rs#)	rs1378823
Submitted Batch ID	SNP500CANCER_07_03_08_C
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	LRIG3-02

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	408
Population	N.D.

Allele
Observed Allele	T/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 9
Genotype Summary	population count: 9
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TCAGAGGGCA GGACGAAAGT AAATATCAAA TGAGTATCAA ATTAGATAGC ATATTCTCAG
 CAAGATTCAA TAAATTATAG CCATAGGTAT TTTTAATGAA AATCAGGCAA TTTCTCCAAT
 CTGTATTCTG CTTATGGTAT TACATGCATG CACCACTCAC ACAATCATCT GGTAAACAGA
 TAGACACTTA CCATGGCTGA TAAGAATTAA ATTATGACCA GAACTAATGA GGCCAAATAC
 AAGAAAGTCA CCTTTTAAAA TTGAACTTAC AAAAGCCTTT TTCCACATTA CATTGACAAT
 K
 CCTTCTTCAA AATCTACCTC ATAGCTCACA CTATAAATAT GGCCATCCAA GATCATTTGA
 GACTGAAAAA CTAAGTTTAC TTATTCCAAA GCAATAAGAA AATGTATATA TTCTTTTTCA
 GYCAAGAGTT TGGGCTTTTG TGATAACTGA AATATATTAG GTAGCAGAAT GTAGTCACCA
 AAATATATTT TGATCTTCTG AATAAATGAC TTTGTTCCTA GGAAAATTCT CAGTGGAAGC
 CCAAAGCTAC AAGAGGCAAG ATATTTGACT CTTGGATTGT TTTTCTAGGG CTTGTTGAAA

Submitted Frequency for ss105437732

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
AFR2 - WEST AFRICA	120	G/G=0.51666701 G/T=0.40000001 T/T=0.05000000 N/N=0.03333300	SNP500CANCER_07_03_08_B	SNP500CANCER
ASI2 - EAST ASIA	180	G/G=0.44444400 G/T=0.41111100 T/T=0.13333300 N/N=0.01111100	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/T=0.45833299 G/G=0.37500000 T/T=0.16666700	SNP500CANCER_07_03_08_B	SNP500CANCER
P1 - MULTI-NATIONAL	204	G/G=0.61764699 G/T=0.32352901 T/T=0.04902000 N/N=0.00980400	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	G/G=0.82608700 G/T=0.17391300	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC2 - MULTI-NATIONAL	120	G/G=0.71666700 G/T=0.21666700 N/N=0.05000000 T/T=0.01666700	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/G=0.74193501 G/T=0.22580600 N/N=0.03225800	SNP500CANCER_07_03_08_B	SNP500CANCER
P2 - MULTI-NATIONAL	420	G/G=0.54285699 G/T=0.35238099 T/T=0.07619000 N/N=0.02857100	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/G=0.50000000 G/T=0.45833299 T/T=0.04166700	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105437732

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	202	202	G=0.78712869	T=0.21287128	G/G=0.62376237 G/T=0.32673267 T/T=0.04950495	Pr(chiSq=0.063,df=1) =1.000	Genotype Freq.
CAUC1 - MULTI-NATIONAL	60	60	G=0.88333333	T=0.11666667	G/G=0.76666665 G/T=0.23333333	Pr(chiSq=0.115,df=1) =0.752	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.60416669	T=0.39583334	G/T=0.45833334 G/G=0.37500000 T/T=0.16666667	Pr(chiSq=0.042,df=1) =1.000	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	G=0.91304350	T=0.08695652	G/G=0.82608694 G/T=0.17391305	Pr(chiSq=0.035,df=1) =1.000	Genotype Freq.
PAC1 - MULTI-NATIONAL	48	48	G=0.72916669	T=0.27083334	G/G=0.50000000 G/T=0.45833334 T/T=0.04166667	Pr(chiSq=0.618,df=1) =0.439	Genotype Freq.
P2 - MULTI-NATIONAL	408	408	G=0.74019605	T=0.25980392	G/G=0.55882353 G/T=0.36274511 T/T=0.07843138	Pr(chiSq=0.659,df=1) =0.439	Genotype Freq.
CAUC2 - MULTI-NATIONAL	114	114	G=0.86842108	T=0.13157895	G/G=0.75438595 G/T=0.22807017 T/T=0.01754386	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
AFR2 - WEST AFRICA	116	116	G=0.74137932	T=0.25862068	G/G=0.53448278 G/T=0.41379312 T/T=0.05172414	Pr(chiSq=0.363,df=1) =0.584	Genotype Freq.
ASI2 - EAST ASIA	178	178	G=0.65730339	T=0.34269664	G/G=0.44943821 G/T=0.41573033 T/T=0.13483146	Pr(chiSq=0.530,df=1) =0.479	Genotype Freq.

Submitted individual genotype for ss105437732

There is no individual genotype data for ss105437732.

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