Submitted SNP(ss) Details: ss105437738

Submitted SNP(ss) Details: ss105437738

Submitter
Handle	SNP500CANCER
Submitter SNP ID	LRIG3-03
RefSNP(rs#)	rs7963473
Submitted Batch ID	SNP500CANCER_07_03_08_C
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	LRIG3-03

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	406
Population	N.D.

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 9
Genotype Summary	population count: 9
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTATTCCCAA TGCAGCAATC AGAATAATCC TGTTACACAT AAGTGTAAGA TTCATGCTCA
 GACCCCCCCA TGGCATCCTA GCTCACTCAG TAAAAGTCAA TTTAATGGCT TAAGGGCCCC
 ATGATCTGGT TTCTCTCCAA CTTCATCTCC CACTTCATCT CTTGCTATGA TTCACTCAGC
 TTTAGCCACT CTGGCTTCCT TGAAGTTTTT CTGATGAACC TTTCTTGACC TTCTTAAAAT
 TGCAAACCCT CCCCATAAAA CTTCCTTAAC TTATAACCAT CTAATATCCT TTAAGATTAA
 M
 TTTTATTGTC TATTTCTCTT TACTAGATGT AAGCCCTGTG AAGTCAGGAA TTTTTGTTTG
 TTTTGTTCAA TACCTCTAGT GTCTAGAAGG GTGTTTGGCA CATACTAGGT GTTCAATAAA
 TATTTAATAA ATAAATAAGT GAAAAATTAA TTCATTCATT TGCATATTCA ACAAATATTT
 ATCGAGGACC CACTATGTTT CAGGTACTGT TCTAGGCTGC TTAATCCTGT CCCACTACAA
 TAACCTGCCC CTGGGTTTTT GGCCAATAAT GCTTACCTTT CGCTGGTGTT GTGCAAAACT

Submitted Frequency for ss105437738

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
CAUC2 - MULTI-NATIONAL	120	A/A=0.71666700 A/C=0.21666700 N/N=0.05000000 C/C=0.01666700	SNP500CANCER_07_03_08_B	SNP500CANCER
P2 - MULTI-NATIONAL	420	A/A=0.54285699 A/C=0.33809501 C/C=0.08571400 N/N=0.03333300	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR2 - WEST AFRICA	120	A/A=0.51666701 A/C=0.38333300 C/C=0.06666700 N/N=0.03333300	SNP500CANCER_07_03_08_B	SNP500CANCER
P1 - MULTI-NATIONAL	204	A/A=0.60784298 A/C=0.34313700 C/C=0.04902000	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	A/A=0.78260899 A/C=0.21739100	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	A/A=0.77419400 A/C=0.22580600	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	A/C=0.50000000 A/A=0.33333299 C/C=0.16666700	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	A/A=0.50000000 A/C=0.45833299 C/C=0.04166700	SNP500CANCER_07_03_08_B	SNP500CANCER
ASI2 - EAST ASIA	180	A/A=0.44444400 A/C=0.38888901 C/C=0.14444400 N/N=0.02222200	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105437738

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	204	204	A=0.77941179	C=0.22058824	A/A=0.60784316 A/C=0.34313726 C/C=0.04901961	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
CAUC1 - MULTI-NATIONAL	62	62	A=0.88709676	C=0.11290322	A/A=0.77419353 A/C=0.22580644	Pr(chiSq=0.107,df=1) =0.752	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	A=0.58333331	C=0.41666666	A/C=0.50000000 A/A=0.33333334 C/C=0.16666667	Pr(chiSq=0.020,df=1) =1.000	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	A=0.89130437	C=0.10869565	A/A=0.78260869 A/C=0.21739130	Pr(chiSq=0.070,df=1) =1.000	Genotype Freq.
PAC1 - MULTI-NATIONAL	48	48	A=0.72916669	C=0.27083334	A/A=0.50000000 A/C=0.45833334 C/C=0.04166667	Pr(chiSq=0.618,df=1) =0.439	Genotype Freq.
P2 - MULTI-NATIONAL	406	406	A=0.73645318	C=0.26354679	A/A=0.56157637 A/C=0.34975371 C/C=0.08866995	Pr(chiSq=1.989,df=1) =0.200	Genotype Freq.
CAUC2 - MULTI-NATIONAL	114	114	A=0.86842108	C=0.13157895	A/A=0.75438595 A/C=0.22807017 C/C=0.01754386	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
AFR2 - WEST AFRICA	116	116	A=0.73275864	C=0.26724139	A/A=0.53448278 A/C=0.39655173 C/C=0.06896552	Pr(chiSq=0.009,df=1) =1.000	Genotype Freq.
ASI2 - EAST ASIA	176	176	A=0.65340906	C=0.34659091	A/A=0.45454547 A/C=0.39772728 C/C=0.14772727	Pr(chiSq=1.307,df=1) =0.254	Genotype Freq.

Submitted individual genotype for ss105437738

There is no individual genotype data for ss105437738.

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