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Submitted SNP(ss) Details: ss105437739           
Submitter
HandleSNP500CANCER
Submitter SNP IDSLC28A1-10
RefSNP(rs#)rs17215975
Submitted Batch IDSNP500CANCER_07_03_08_C
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTAQMAM
Ascertainment Samplesize416
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 4
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss105437739|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 TGTGCTGAGG AGAGGGGGTG GTCTGGCGGC TGGTCACTAT TTAGAGGGGA GCCGAGAGGA
 CAAGGCTGCC TCCAAAGAGG CCCTGCATGT GGAACCCTGG GACTTCATGC ACTGATCTCA
 GAGCATCTTC CCGGATCCTG TCAGGCATCT GAGTGGCAAG GCCTGGGATG GAGTGGGCTG
 TCTGGGGTCT CCTGGGCCCC GCCTGGCACC CTRCATCCTG CCTGCCTCTA ACCTGCGGTC
 CTATGATCTC CTTCCCGGCA GGTTCTGCCC ATCATTGTCT TTTTCAGCTG TGTCATATCC
 R
 TTCTCTACCA CGTGGGCCTC ATGCAGTGGG TGATCCTGAA GGTAAGTTCC CAGTGCYCAT
 GGCCAGGGCT CTCCCARAGT CACCAGCTCA CAGGGTTCAC ACTSTCCCAG AATGCCTTGC
 TCCCAGAGCC CAAACCTCCC CAGACACACT GCTCCCCAAG CCCACACCCT TCCAGARTCC
 CCTGTTCCCA GTGCCTCCAC CTTCCCAGAA TCCCCAGCTG CCAAGTTCCA CACCTTTCTG
 GAATCCTTTG CTCCTGAGGC CCATACCTTC CCWGAATCCC CAACTCTTAG AGTTCACACC

  Submitted Frequency for ss105437739 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
CAUC2
- MULTI-NATIONAL 		120G/G=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
P2
- MULTI-NATIONAL 		420G/G=0.98095202
A/G=0.00952400
N/N=0.00952400
SNP500CANCER_07_03_08_BSNP500CANCER
AFR2
- WEST AFRICA 		120G/G=0.93333298
A/G=0.03333300
N/N=0.03333300
SNP500CANCER_07_03_08_BSNP500CANCER
ASI2
- EAST ASIA 		180G/G=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER


  dbSNP summary of Genotypes for ss105437739 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
P2
- MULTI-NATIONAL 		416416G=0.99519229
A=0.00480769G/G=0.99038464
A/G=0.00961538
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
AFR2
- WEST AFRICA 		116116G=0.98275864
A=0.01724138G/G=0.96551722
A/G=0.03448276
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss105437739 back to top
There is no individual genotype data for ss105437739.

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