NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss105437741           
Submitter
HandleSNP500CANCER
Submitter SNP IDCYP3A5-16
RefSNP(rs#)rs28365085
Submitted Batch IDSNP500CANCER_07_03_08_C
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTAQMAM
Ascertainment Samplesize420
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 4
Genotype Summarypopulation count: 8
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss105437741|allelePos=301|len=601|taxid=9606|alleles='T/C'|mol=Genomic
 GAATTTGTCT CAGGCCTGGC ACAGAGTCAG TGCTCCATAA ATATTTTGTT AAACGATGGA
 TGGTGAGTGC TTTTACTATC CAGTATTTAC CCAGCTTATA GATTAAGTAT GAAGAGTTCA
 AGATACATGG TGTTAAGAGT CGTTTTTATA TGCTTGCAAA GCATTTTTGT CATATTTTTT
 CTACTTTGCT TCCATCTTTT CTTCTTTCAC TTCATTTATT AATTCTCCAT ATGCTTGTTT
 AACTATTGYA GATCCCCTTG AAATTAGACA CGCAAGGACT TCTTCAACCA GAAAAACCCA
 Y
 TGTTCTAAAG GTGGATTCAA SAGATGGAAC CCTAAGTGGA GAATGAGTTA TTCTAAGGAY
 TTCTRCTTTG GTCTTCAAGA AAGCTGTGCC CCAGAACACC AGAGATTTCR ACTTAGTCAA
 TAAAACCTTG AAATAAAGAT GGGCTTAATC TAATGTACTG CATGAGTAGT TGGTGATTTT
 GTACATTCAT TGAGCTCTCC CAGAGTCTGT GTAGAGTGTT GTGCATTATG TAGTATAAAG
 GAGGTGACCA GGTAAGTGAC AGATAGGTAG ACTCAGCTTC TCTGCTTCTC ATAGGACTAC

  Submitted Frequency for ss105437741 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ASI2
EAST ASIA
180T/T=0.98888898
C/T=0.01111100
SNP500CANCER_07_03_08_BSNP500CANCER
CAUC2
MULTI-NATIONAL
120T/T=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
AFR2
WEST AFRICA
120T/T=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
P2
MULTI-NATIONAL
420T/T=0.99523801
C/T=0.00476200
SNP500CANCER_07_03_08_BSNP500CANCER


  dbSNP summary of Genotypes for ss105437741 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-HCB
EAST ASIA
8686T=0.98837209
C=0.01162791T/T=0.97674417
C/T=0.02325581
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-JPT172172T=0.98255813
C=0.01744186T/T=0.96511626
C/T=0.03488372
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHB8282T=0.98780489
C=0.01219512T/T=0.97560978
C/T=0.02439024
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD170170T=0.99411762
C=0.00588235T/T=0.98823529
C/T=0.01176471
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
P2
MULTI-NATIONAL
420420T=0.99761903
C=0.00238095T/T=0.99523807
C/T=0.00476190
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
ASI2
EAST ASIA
180180T=0.99444443
C=0.00555556T/T=0.98888886
C/T=0.01111111
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss105437741 back to top
There is no individual genotype data for ss105437741.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement