Submitted SNP(ss) Details: ss105437744

Submitted SNP(ss) Details: ss105437744

Submitter
Handle	SNP500CANCER
Submitter SNP ID	LTA-11
RefSNP(rs#)	rs1041981
Submitted Batch ID	SNP500CANCER_07_03_08_C
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	LTA-11

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	416
Population	N.D.

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	A:Germline C:Germline
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 9
Genotype Summary	population count: 9
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TCGGGGGTCG GGGGGTGCTS TYTCCCAGGG CGGGAGGTCT GTCTTCCGCC GCGTGCCCCG
 CCCCGCTCAC TGTCTCTCTC TCTCTCTCTC TNNTNNTCTS TGCAGGTTCT CCCCATGACA
 CCACCTGAAC GTCTCTTCCT CCCAAGGGTG YGTGGCACCA CCCTACACCT CCTCCTTCTG
 GGGCTGCTGC TGGTTCTGCT GCCTGGGGCC CAGGWGAGGC AGCAGGAGAA TGGGGGCTGC
 TGGGGTGGCT CAGCCAAACC TTGAGCCCTA GAGCCCCCCT CAACTCTSTT CTCCCCTAGG
 GGCTCCCTGG TGTTGGCCTC ACACCTTCAG CTGCCCAGAC TGCCCGTCAG CMCCCYAAGA
 TGCATCTTGC CCACAGCA
 M
 CCTCAAACCT GCTGCTCACC TCATTGGTAA ACATCCACCT GACCTCCCAG ACATGTCCCC
 ACCAGCTCTC CTCCTACCCC TGCCTCAGGA ACCCAAGCAT CCACCCCTCT CCCCCAACTT
 CCCCCACGCT AAAAAAAACA GAGGGAGCCC ACTCCTATGC CTCCCCCTGC CAYCCCCCAG
 GAACTCAGTT GTTCAGTGCC CACTTCCTCA GGGATTGAGA CCTCTG

Submitted Frequency for ss105437744

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
HISP1 - MULTI-NATIONAL	46	C/C=0.43478301 A/C=0.34782600 A/A=0.21739100	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR2 - WEST AFRICA	120	A/C=0.46666700 C/C=0.28333300 A/A=0.25000000	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC2 - MULTI-NATIONAL	120	A/C=0.51666701 C/C=0.36666700 A/A=0.08333300 N/N=0.03333300	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	C/C=0.61290300 A/C=0.29032299 A/A=0.09677400	SNP500CANCER_07_03_08_B	SNP500CANCER
ASI2 - EAST ASIA	180	A/C=0.50000000 C/C=0.32222199 A/A=0.17777801	SNP500CANCER_07_03_08_B	SNP500CANCER
P1 - MULTI-NATIONAL	204	C/C=0.45098001 A/C=0.40196100 A/A=0.14705899	SNP500CANCER_07_03_08_B	SNP500CANCER
P2 - MULTI-NATIONAL	420	A/C=0.49523801 C/C=0.32381001 A/A=0.17142899 N/N=0.00952400	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	A/C=0.58333302 C/C=0.25000000 A/A=0.16666700	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	C/C=0.45833299 A/C=0.41666701 A/A=0.12500000	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105437744

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	204	204	C=0.65196079	A=0.34803921	C/C=0.45098040 A/C=0.40196079 A/A=0.14705883	Pr(chiSq=1.332,df=1) =0.251	Genotype Freq.
CAUC1 - MULTI-NATIONAL	62	62	C=0.75806451	A=0.24193548	C/C=0.61290324 A/C=0.29032257 A/A=0.09677419	Pr(chiSq=1.348,df=1) =0.251	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	C=0.54166669	A=0.45833334	A/C=0.58333331 C/C=0.25000000 A/A=0.16666667	Pr(chiSq=0.734,df=1) =0.403	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	C=0.60869563	A=0.39130434	C/C=0.43478259 A/C=0.34782609 A/A=0.21739130	Pr(chiSq=1.675,df=1) =0.200	Genotype Freq.
PAC1 - MULTI-NATIONAL	48	48	C=0.66666669	A=0.33333334	C/C=0.45833334 A/C=0.41666666 A/A=0.12500000	Pr(chiSq=0.094,df=1) =1.000	Genotype Freq.
P2 - MULTI-NATIONAL	416	416	C=0.57692307	A=0.42307693	A/C=0.50000000 C/C=0.32692307 A/A=0.17307693	Pr(chiSq=0.122,df=1) =0.752	Genotype Freq.
CAUC2 - MULTI-NATIONAL	116	116	C=0.64655173	A=0.35344827	A/C=0.53448278 C/C=0.37931034 A/A=0.08620690	Pr(chiSq=1.665,df=1) =0.200	Genotype Freq.
AFR2 - WEST AFRICA	120	120	C=0.51666665	A=0.48333332	A/C=0.46666667 C/C=0.28333333 A/A=0.25000000	Pr(chiSq=0.258,df=1) =0.655	Genotype Freq.
ASI2 - EAST ASIA	180	180	C=0.57222223	A=0.42777777	A/C=0.50000000 C/C=0.32222223 A/A=0.17777778	Pr(chiSq=0.041,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss105437744

There is no individual genotype data for ss105437744.

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