Submitted SNP(ss) Details: ss105437745

Submitted SNP(ss) Details: ss105437745

Submitter
Handle	SNP500CANCER
Submitter SNP ID	NPSR1-22
RefSNP(rs#)	rs2040854
Submitted Batch ID	SNP500CANCER_07_03_08_C
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	NPSR1-22

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	418
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 9
Genotype Summary	population count: 9
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CTCTTCCAGG CACAACTACA CTATATCTTT CTCAGCCTCC CTTATGGTTA ACTCTGTTCA
 TGTCATTGAA TTTTGGCCAA TGGAACGTGG NAAAAAAATT CTGCGCACCC TCCTAATATG
 GTCCATAAAW ATTTCTCAAG TGTGTTTCAT GCTTTCACAC CCTCCCCTCA TTTGCAAGCT
 GAATGAAGAG GACTCTCAGG GCTTAGAAGA GGGCAAAGCC ACCAGATGGA AGAACACTAG
 GTCTCAGCAT TACTGCATGG AATAGAGCCT GTTTCTTTAC CACCAATCCT CATTGAACGG
 T
 S
 ATATAAGTGA GAAACAAACA TTTATTTTTG CTCAGCTACG GAATGTTTGG AAGTTGTTTG
 TTTCACTGGT TAGCCTATCC TGCCTGATAC ACCCACAAAA TCTCTGGAAG GGCTGATGCG
 GGACAGGTTT TCCYGTGGCA GGAAGTGAAC TGCTCAGGTG AGACAGAGAC GCGGAAGAAA
 CTTCTGACCC TATGGACAGC TCCCCCCATG AAAAAGAGGG CGAGGCTGAG CTGAGCATRC
 TCAGTAGAAT CTTTCCACAT TCAATCCAAG CGACTTAAGC CCCTCTTTCT TCCCTGGTAG

Submitted Frequency for ss105437745

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
HISP1 - MULTI-NATIONAL	46	G/G=0.73913002 C/G=0.21739100 C/C=0.04347800	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/G=0.50000000 C/G=0.41666701 C/C=0.08333300	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/G=0.54838699 C/G=0.32258099 C/C=0.06451600 N/N=0.06451600	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC2 - MULTI-NATIONAL	120	G/G=0.68333298 C/G=0.26666701 C/C=0.03333300 N/N=0.01666700	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/G=0.45833299 C/G=0.33333299 C/C=0.12500000 N/N=0.08333300	SNP500CANCER_07_03_08_B	SNP500CANCER
ASI2 - EAST ASIA	180	G/G=0.48888901 C/G=0.45555601 C/C=0.05555600	SNP500CANCER_07_03_08_B	SNP500CANCER
P2 - MULTI-NATIONAL	420	G/G=0.62380999 C/G=0.32381001 C/C=0.04761900 N/N=0.00476200	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR2 - WEST AFRICA	120	G/G=0.76666701 C/G=0.18333299 C/C=0.05000000	SNP500CANCER_07_03_08_B	SNP500CANCER
P1 - MULTI-NATIONAL	204	G/G=0.55882400 C/G=0.32352901 C/C=0.07843100 N/N=0.03921600	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105437745

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	196	196	G=0.75000000	C=0.25000000	G/G=0.58163267 C/G=0.33673468 C/C=0.08163265	Pr(chiSq=1.020,df=1) =0.317	Genotype Freq.
CAUC1 - MULTI-NATIONAL	58	58	G=0.75862068	C=0.24137931	G/G=0.58620691 C/G=0.34482759 C/C=0.06896552	Pr(chiSq=0.099,df=1) =1.000	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.70833331	C=0.29166666	G/G=0.50000000 C/G=0.41666666 C/C=0.08333334	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	G=0.84782606	C=0.15217391	G/G=0.73913044 C/G=0.21739130 C/C=0.04347826	Pr(chiSq=0.571,df=1) =0.479	Genotype Freq.
PAC1 - MULTI-NATIONAL	44	44	G=0.68181819	C=0.31818181	G/G=0.50000000 C/G=0.36363637 C/C=0.13636364	Pr(chiSq=0.577,df=1) =0.479	Genotype Freq.
P2 - MULTI-NATIONAL	418	418	G=0.78947371	C=0.21052632	G/G=0.62679428 C/G=0.32535884 C/C=0.04784689	Pr(chiSq=0.094,df=1) =1.000	Genotype Freq.
CAUC2 - MULTI-NATIONAL	118	118	G=0.83050847	C=0.16949153	G/G=0.69491524 C/G=0.27118644 C/C=0.03389831	Pr(chiSq=0.080,df=1) =1.000	Genotype Freq.
AFR2 - WEST AFRICA	120	120	G=0.85833335	C=0.14166667	G/G=0.76666665 C/G=0.18333334 C/C=0.05000000	Pr(chiSq=3.635,df=1) =0.100	Genotype Freq.
ASI2 - EAST ASIA	180	180	G=0.71666664	C=0.28333333	G/G=0.48888889 C/G=0.45555556 C/C=0.05555556	Pr(chiSq=1.334,df=1) =0.251	Genotype Freq.

Submitted individual genotype for ss105437745

There is no individual genotype data for ss105437745.

Disclaimer Privacy statement