Submitted SNP(ss) Details: ss105437750

Submitted SNP(ss) Details: ss105437750

Submitter
Handle	SNP500CANCER
Submitter SNP ID	XPC-21
RefSNP(rs#)	rs2733532
Submitted Batch ID	SNP500CANCER_07_03_08_C
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	XPC-21

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	418
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 9
Genotype Summary	population count: 21
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CTTTGGTCCA GAAATGAGGT AGCAAATGCA AGGCACGAAT CACAGGCATC CCCAGATGAG
 GCAGTGTGCT CCTAGAGGGC AGCTTCCTGC CCAGCCATCA TCCTTGTGTT CCCCTGCACT
 CAGCTCGTAG CAGGTGCTCC AGTGTCTGCT TGGATGCACC CCAGGCTGGG ACGGCTCAGT
 AAGAAGGGTC TGGGCTCTCT CCCTGCCCTG TCCCATGCCC TTGTCCTCCC NAGAGTTACA
 CAGCTTAGGG CAGGCTGGGA ACTTGCTGCC TCTTCATGGG GCTTCCTGGT RTCTGATTAC
 T
 R
 ACCCTCGCCT GTGTCCTCCC ACCACTGCCA CCTGTCCAGA GTGAGGCAGC AGCTCCCCAC
 ACAGATGCAG GAGGTGGACT CTCTTCTGAT GAAGAGGAGG GGACCAGCTC TCAAGCAGAA
 GCGGCCAGGA TACTGGCTGC CTCCTGGCCT CAAAACCGAG AAGATGAAGA AAAGCAGAAG
 CTGAAGGGTG GGCCCAAGAA GACCAAAAGG GAAAAGMAAG CAGCAGCTTC CCACCTGTTC
 CCATTTGAGM AGCTGTGAGC TGAGCGCCCA CTAGAGGGGC ACCCACCAGT TGCTGCTGCC

Submitted Frequency for ss105437750

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
CAUC2 - MULTI-NATIONAL	120	A/G=0.53333300 G/G=0.34999999 A/A=0.11666700	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/G=0.45161301 A/G=0.41935501 A/A=0.12903200	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	A/G=0.52173901 G/G=0.39130399 A/A=0.08695700	SNP500CANCER_07_03_08_B	SNP500CANCER
P1 - MULTI-NATIONAL	204	A/G=0.46078399 G/G=0.45098001 A/A=0.08823500	SNP500CANCER_07_03_08_B	SNP500CANCER
ASI2 - EAST ASIA	180	A/G=0.46666700 G/G=0.41111100 A/A=0.11111100 N/N=0.01111100	SNP500CANCER_07_03_08_B	SNP500CANCER
P2 - MULTI-NATIONAL	420	A/G=0.45238101 G/G=0.44285700 A/A=0.10000000 N/N=0.00476200	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/G=0.54166698 A/G=0.45833299	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR2 - WEST AFRICA	120	G/G=0.58333302 A/G=0.34999999 A/A=0.06666700	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	A/G=0.45833299 G/G=0.41666701 A/A=0.12500000	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105437750

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	204	204	G=0.68137252	A=0.31862745	A/G=0.46078432 G/G=0.45098040 A/A=0.08823530	Pr(chiSq=0.382,df=1) =0.584	Genotype Freq.
CAUC1 - MULTI-NATIONAL	62	62	G=0.66129035	A=0.33870968	G/G=0.45161289 A/G=0.41935483 A/A=0.12903225	Pr(chiSq=0.126,df=1) =0.752	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.77083331	A=0.22916667	G/G=0.54166669 A/G=0.45833334	Pr(chiSq=0.861,df=1) =0.371	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	G=0.65217394	A=0.34782609	A/G=0.52173913 G/G=0.39130434 A/A=0.08695652	Pr(chiSq=0.517,df=1) =0.479	Genotype Freq.
PAC1 - MULTI-NATIONAL	48	48	G=0.64583331	A=0.35416666	A/G=0.45833334 G/G=0.41666666 A/A=0.12500000	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HapMap-CEU	226	226	G=0.60619467	A=0.39380530	A/G=0.48672566 G/G=0.36283186 A/A=0.15044248	Pr(chiSq=0.043,df=1) =1.000	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	G=0.62790698	A=0.37209302	A/G=0.46511629 G/G=0.39534885 A/A=0.13953489	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HapMap-JPT	172	172	G=0.66860467	A=0.33139536	A/G=0.45348838 G/G=0.44186047 A/A=0.10465116	Pr(chiSq=0.047,df=1) =1.000	Genotype Freq.
HapMap-YRI	226	226	G=0.74778759	A=0.25221238	G/G=0.53982300 A/G=0.41592920 A/A=0.04424779	Pr(chiSq=1.191,df=1) =0.294	Genotype Freq.
HAPMAP-ASW	98	98	G=0.67346936	A=0.32653061	A/G=0.44897959 G/G=0.44897959 A/A=0.10204082	Pr(chiSq=0.021,df=1) =1.000	Genotype Freq.
HAPMAP-CHB	82	82	G=0.62195122	A=0.37804878	A/G=0.46341464 G/G=0.39024389 A/A=0.14634146	Pr(chiSq=0.009,df=1) =1.000	Genotype Freq.
HAPMAP-CHD	170	170	G=0.69411767	A=0.30588236	A/G=0.54117650 G/G=0.42352942 A/A=0.03529412	Pr(chiSq=6.402,df=1) =0.020	Genotype Freq.
HAPMAP-GIH	176	176	G=0.65340906	A=0.34659091	A/G=0.62500000 G/G=0.34090909 A/A=0.03409091	Pr(chiSq=12.701,df=1) =0.001	Genotype Freq.
HAPMAP-LWK	180	180	G=0.75555557	A=0.24444444	G/G=0.57777780 A/G=0.35555556 A/A=0.06666667	Pr(chiSq=0.126,df=1) =0.752	Genotype Freq.
HAPMAP-MEX	98	98	G=0.70408165	A=0.29591838	A/G=0.55102038 G/G=0.42857143 A/A=0.02040816	Pr(chiSq=5.091,df=1) =0.025	Genotype Freq.
HAPMAP-MKK	286	286	G=0.83566433	A=0.16433567	G/G=0.70629370 A/G=0.25874126 A/A=0.03496503	Pr(chiSq=0.480,df=1) =0.527	Genotype Freq.
HAPMAP-TSI	176	176	G=0.55113637	A=0.44886363	A/G=0.42045453 G/G=0.34090909 A/A=0.23863636	Pr(chiSq=1.985,df=1) =0.200	Genotype Freq.
P2 - MULTI-NATIONAL	418	418	G=0.67224878	A=0.32775119	A/G=0.45454547 G/G=0.44497609 A/A=0.10047847	Pr(chiSq=0.207,df=1) =0.655	Genotype Freq.
CAUC2 - MULTI-NATIONAL	120	120	G=0.61666667	A=0.38333333	A/G=0.53333336 G/G=0.34999999 A/A=0.11666667	Pr(chiSq=0.984,df=1) =0.343	Genotype Freq.
AFR2 - WEST AFRICA	120	120	G=0.75833333	A=0.24166666	G/G=0.58333331 A/G=0.34999999 A/A=0.06666667	Pr(chiSq=0.122,df=1) =0.752	Genotype Freq.
ASI2 - EAST ASIA	178	178	G=0.65168542	A=0.34831461	A/G=0.47191012 G/G=0.41573033 A/A=0.11235955	Pr(chiSq=0.139,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss105437750

There is no individual genotype data for ss105437750.

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