Submitted SNP(ss) Details: ss105437751

Submitted SNP(ss) Details: ss105437751

Submitter
Handle	SNP500CANCER
Submitter SNP ID	IL1B-42
RefSNP(rs#)	rs6735739
Submitted Batch ID	SNP500CANCER_07_03_08_C
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	IL1B-42

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	416
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 9
Genotype Summary	population count: 9
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TACAGAGAGA AAAAGTCTGG TGGTGCTAGA GGGAGATTAA AGATGGAAAG AAATCTACCA
 TAGKACTGTA TAAGGAGACC AATTTTATTG ACATTGTAAT ACCTAACCTT GTTTTCAGAC
 TCTCCCTTTC TCCCTTAATC ACYTAGCCTT GTTTCCACAT GAATAAGCTC TCCCTTAGCT
 GAGAAAGCCA GAGGAACTCG ATTTCGCTCC TTCATTTACC AGACATCAAG GACTCCTTAC
 CCACCCCCTT CCTCAAGGAG TTAACTTGTG TACGCTGACT CCCAACATAT CAAAGAGTCC
 R
 ATTAACTGAT AAGGTACTGA AGCAAGCAAT GTACGAAGTT CCCAGGATTT CGCTCAAGAG
 ATAACAGCAT AAAGCCTTGA GTTTGTGTCC GGCAGAGCCC CCATACCTAA CATCTTATGA
 TAGATTTAGA GCCCCTGCAC CTGGAACTGT TTGTTTCCCT GTAACCACTT GTCTTTTTAA
 TTTCTTTGCA TGTTTTTACT CCTGTAGAAT TGTTGCAACT GAGCTCCCCT CCCCTTCCTA
 AACCAAAGCA TAAAGGAAAA TCAAGCCCCT TCCAAGGGGC CGAGAGAATT TCGAGCGTTA

Submitted Frequency for ss105437751

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
AFR1 - MULTI-NATIONAL	48	A/G=0.54166698 A/A=0.37500000 G/G=0.08333300	SNP500CANCER_07_03_08_B	SNP500CANCER
P1 - MULTI-NATIONAL	204	A/G=0.43137300 G/G=0.29411799 A/A=0.27451000	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	A/G=0.50000000 A/A=0.29166701 G/G=0.20833300	SNP500CANCER_07_03_08_B	SNP500CANCER
P2 - MULTI-NATIONAL	420	A/G=0.46666700 G/G=0.30476201 A/A=0.21904799 N/N=0.00952400	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR2 - WEST AFRICA	120	A/G=0.48333299 A/A=0.33333299 G/G=0.18333299	SNP500CANCER_07_03_08_B	SNP500CANCER
ASI2 - EAST ASIA	180	A/G=0.47777799 G/G=0.31111100 A/A=0.21111099	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/G=0.58064502 A/G=0.35483900 A/A=0.06451600	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC2 - MULTI-NATIONAL	120	A/G=0.43333301 G/G=0.41666701 A/A=0.11666700 N/N=0.03333300	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	A/A=0.43478301 A/G=0.34782600 G/G=0.21739100	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105437751

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	204	204	G=0.50980395	A=0.49019608	A/G=0.43137255 G/G=0.29411766 A/A=0.27450982	Pr(chiSq=1.912,df=1) =0.200	Genotype Freq.
CAUC1 - MULTI-NATIONAL	62	62	G=0.75806451	A=0.24193548	G/G=0.58064514 A/G=0.35483870 A/A=0.06451613	Pr(chiSq=0.033,df=1) =1.000	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	A=0.64583331	G=0.35416666	A/G=0.54166669 A/A=0.37500000 G/G=0.08333334	Pr(chiSq=0.813,df=1) =0.371	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	A=0.60869563	G=0.39130434	A/A=0.43478259 A/G=0.34782609 G/G=0.21739130	Pr(chiSq=1.675,df=1) =0.200	Genotype Freq.
PAC1 - MULTI-NATIONAL	48	48	A=0.54166669	G=0.45833334	A/G=0.50000000 A/A=0.29166666 G/G=0.20833333	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
P2 - MULTI-NATIONAL	416	416	G=0.54326922	A=0.45673078	A/G=0.47115386 G/G=0.30769232 A/A=0.22115384	Pr(chiSq=0.532,df=1) =0.479	Genotype Freq.
CAUC2 - MULTI-NATIONAL	116	116	G=0.65517241	A=0.34482759	A/G=0.44827586 G/G=0.43103448 A/A=0.12068965	Pr(chiSq=0.004,df=1) =1.000	Genotype Freq.
AFR2 - WEST AFRICA	120	120	A=0.57499999	G=0.42500001	A/G=0.48333332 A/A=0.33333334 G/G=0.18333334	Pr(chiSq=0.007,df=1) =1.000	Genotype Freq.
ASI2 - EAST ASIA	180	180	G=0.55000001	A=0.44999999	A/G=0.47777778 G/G=0.31111112 A/A=0.21111111	Pr(chiSq=0.109,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss105437751

There is no individual genotype data for ss105437751.

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