Submitted SNP(ss) Details: ss105437755

Submitted SNP(ss) Details: ss105437755

Submitter
Handle	SNP500CANCER
Submitter SNP ID	VEGFA-41
RefSNP(rs#)	rs9394963
Submitted Batch ID	SNP500CANCER_07_03_08_C
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	VEGFA-41

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	418
Population	N.D.

Allele
Observed Allele	T/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 9
Genotype Summary	population count: 9
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AAAAATATCA GAGAATAATG AAGTTGAAAA TAGAAGAACA TTGAGACAAT CAATAAAACC
 AAAAGCTGTT ATTTCAAGAA AATCAATAAT ATTGATAAAC CTCTAGCCAG ATTGATCGGG
 AAAAAAAGAG AAGACACAAA TTACCAGTAT CAGGAATGAA AGCTGTGATT GACTACAGAC
 TGTATAGATA GTAAAAAGAT AAGAAGGTAA TATTATGAAA AATTTTACTC CAATAAATTC
 CATAACTTAG ATGAAATGAA CTAATTCTGT CAAAGACACA TACTATGGTA GCTTACTCAA
 K
 AAGAAACAGA GGCAGGGCGT GATGGCTCAT GCCTGTAATC CCAGCACTTT GGGAGGCCAA
 GGTGGGCGGA TCACCTGAGG TCAGGAGTTG GAGACCAGCC TGGCCACCAT AGTGAAACCC
 CATCTCTACT AAAAATACAG AAATACAAAA ATTAGCCAGG TGTGGTGGCG CACGCCTGTA
 ATGCCAGCTA CTTGAGAGGC TGAGGCATGA GAATCGCTTG AACCTGGGAG GTGGAGGTTG
 CAGTGAGCTG AGATTGTGCC ACTCCACTCC ATTCAGGTTA TCTAGAAGAA ACAGATAACT

Submitted Frequency for ss105437755

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
CAUC2 - MULTI-NATIONAL	120	G/G=0.43333301 G/T=0.38333300 T/T=0.16666700 N/N=0.01666700	SNP500CANCER_07_03_08_B	SNP500CANCER
ASI2 - EAST ASIA	180	G/G=0.58888900 G/T=0.41111100	SNP500CANCER_07_03_08_B	SNP500CANCER
P1 - MULTI-NATIONAL	204	G/G=0.52941197 G/T=0.34313700 T/T=0.11764700 N/N=0.00980400	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR2 - WEST AFRICA	120	G/G=0.61666697 G/T=0.36666700 T/T=0.01666700	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/G=0.54166698 G/T=0.33333299 T/T=0.12500000	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/T=0.54838699 G/G=0.35483900 T/T=0.09677400	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	G/G=0.73913002 G/T=0.17391300 N/N=0.04347800 T/T=0.04347800	SNP500CANCER_07_03_08_B	SNP500CANCER
P2 - MULTI-NATIONAL	420	G/G=0.55238098 G/T=0.39047599 T/T=0.05238100 N/N=0.00476200	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/G=0.54166698 G/T=0.25000000 T/T=0.20833300	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105437755

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	202	202	G=0.70792079	T=0.29207921	G/G=0.53465348 G/T=0.34653464 T/T=0.11881188	Pr(chiSq=2.651,df=1) =0.150	Genotype Freq.
CAUC1 - MULTI-NATIONAL	62	62	G=0.62903225	T=0.37096775	G/T=0.54838711 G/G=0.35483870 T/T=0.09677419	Pr(chiSq=0.950,df=1) =0.343	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.70833331	T=0.29166666	G/G=0.54166669 G/T=0.33333334 T/T=0.12500000	Pr(chiSq=0.897,df=1) =0.371	Genotype Freq.
HISP1 - MULTI-NATIONAL	44	44	G=0.86363637	T=0.13636364	G/G=0.77272725 G/T=0.18181819 T/T=0.04545455	Pr(chiSq=1.144,df=1) =0.294	Genotype Freq.
PAC1 - MULTI-NATIONAL	48	48	G=0.66666669	T=0.33333334	G/G=0.54166669 G/T=0.25000000 T/T=0.20833333	Pr(chiSq=4.594,df=1) =0.050	Genotype Freq.
P2 - MULTI-NATIONAL	418	418	G=0.75119615	T=0.24880382	G/G=0.55502391 G/T=0.39234450 T/T=0.05263158	Pr(chiSq=0.514,df=1) =0.479	Genotype Freq.
CAUC2 - MULTI-NATIONAL	118	118	G=0.63559324	T=0.36440679	G/G=0.44067797 G/T=0.38983050 T/T=0.16949153	Pr(chiSq=1.481,df=1) =0.251	Genotype Freq.
AFR2 - WEST AFRICA	120	120	G=0.80000001	T=0.20000000	G/G=0.61666667 G/T=0.36666667 T/T=0.01666667	Pr(chiSq=1.276,df=1) =0.273	Genotype Freq.
ASI2 - EAST ASIA	180	180	G=0.79444444	T=0.20555556	G/G=0.58888888 G/T=0.41111112	Pr(chiSq=2.222,df=1) =0.150	Genotype Freq.

Submitted individual genotype for ss105437755

There is no individual genotype data for ss105437755.

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