Submitted SNP(ss) Details: ss105437757

Submitted SNP(ss) Details: ss105437757

Submitter
Handle	SNP500CANCER
Submitter SNP ID	AKR1C3-80
RefSNP(rs#)	rs4242785
Submitted Batch ID	SNP500CANCER_07_03_08_C
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	AKR1C3-80

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	418
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 9
Genotype Summary	population count: 9
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GAGGCAGGAG AATCGCTTGA ACCCAGGAGG CAAAGGATGC AGCAGTGAGC TGAGATCACA
 CCACTGCACT CCAGCCTGAR TGACAGAGTG AGGCTCCATC TCAAAAAAAA AAAGCAGGAA
 GTTATGTAAC TGCTGGCAGT GGAAATTTTA ACAAGTGATA GGGTGAGATA GTGTGTGAAA
 AAGCATAAGT ACAGTGGCCC TTCATAAGTG CTTAAAAATT GGTAGATATC ATNNNNNTNN
 NNNGTTAATA TTTTTTTAGT TTCAAGGAAA ATANNNANNN ATAANNNANN NAAAAGGAAA
 CCATGTAAAA GAAAGGAAGA GT
 R
 GCGAGCATGA GTAATTCTTA TCATCCATTA AAAATGTAAT AAGTTGGTGT TTATCTGTTC
 CTTTATATTT CATGTTATTT CTATATAAGA ATTTTTAATG CACTGTAGCT CCTTGGATAT
 TAGACCCTAT ATCATATATA ACAATTTACA TTTCTGAAYC TTACAAAATA TATTGCATAC
 AGTAGRCAGT AGCAGGTAAT AAGTAAAGTA ACAAAAGAAA GTATAATCAG AGTATCTCTG
 CTCTGCTGAC AGATGTACAG GAATATACYT GAATATTTGA CTYTGTGTGT TTTACGTGTT

Submitted Frequency for ss105437757

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
P2 - MULTI-NATIONAL	420	G/G=0.69523799 A/G=0.26190501 A/A=0.03809500 N/N=0.00476200	SNP500CANCER_07_03_08_B	SNP500CANCER
ASI2 - EAST ASIA	180	G/G=0.76666701 A/G=0.22222200 A/A=0.01111100	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/G=0.83333302 A/G=0.12500000 N/N=0.04166700	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/G=0.64516097 A/G=0.29032299 N/N=0.06451600	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC2 - MULTI-NATIONAL	120	G/G=0.61666697 A/G=0.30000001 A/A=0.08333300	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/G=0.58333302 A/G=0.29166701 N/N=0.08333300 A/A=0.04166700	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	G/G=0.52173901 A/G=0.39130399 A/A=0.04347800 N/N=0.04347800	SNP500CANCER_07_03_08_B	SNP500CANCER
P1 - MULTI-NATIONAL	204	G/G=0.64705902 A/G=0.27451000 N/N=0.05882400 A/A=0.01960800	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR2 - WEST AFRICA	120	G/G=0.66666698 A/G=0.28333300 A/A=0.03333300 N/N=0.01666700	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105437757

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	192	192	G=0.83333331	A=0.16666667	G/G=0.68750000 A/G=0.29166666 A/A=0.02083333	Pr(chiSq=0.240,df=1) =0.655	Genotype Freq.
CAUC1 - MULTI-NATIONAL	58	58	G=0.84482759	A=0.15517241	G/G=0.68965518 A/G=0.31034482	Pr(chiSq=0.280,df=1) =0.655	Genotype Freq.
AFR1 - MULTI-NATIONAL	44	44	G=0.79545456	A=0.20454545	G/G=0.63636363 A/G=0.31818181 A/A=0.04545455	Pr(chiSq=0.011,df=1) =1.000	Genotype Freq.
HISP1 - MULTI-NATIONAL	44	44	G=0.75000000	A=0.25000000	G/G=0.54545456 A/G=0.40909091 A/A=0.04545455	Pr(chiSq=0.182,df=1) =0.752	Genotype Freq.
PAC1 - MULTI-NATIONAL	46	46	G=0.93478262	A=0.06521739	G/G=0.86956519 A/G=0.13043478	Pr(chiSq=0.014,df=1) =1.000	Genotype Freq.
P2 - MULTI-NATIONAL	418	418	G=0.83014351	A=0.16985646	G/G=0.69856459 A/G=0.26315790 A/A=0.03827751	Pr(chiSq=0.934,df=1) =0.343	Genotype Freq.
CAUC2 - MULTI-NATIONAL	120	120	G=0.76666665	A=0.23333333	G/G=0.61666667 A/G=0.30000001 A/A=0.08333334	Pr(chiSq=1.565,df=1) =0.251	Genotype Freq.
AFR2 - WEST AFRICA	118	118	G=0.82203388	A=0.17796610	G/G=0.67796612 A/G=0.28813559 A/A=0.03389831	Pr(chiSq=0.014,df=1) =1.000	Genotype Freq.
ASI2 - EAST ASIA	180	180	G=0.87777776	A=0.12222222	G/G=0.76666665 A/G=0.22222222 A/A=0.01111111	Pr(chiSq=0.115,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss105437757

There is no individual genotype data for ss105437757.

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