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Submitted SNP(ss) Details: ss105439095           
Submitter
HandleSNP500CANCER
Submitter SNP IDEPHX1-08
RefSNP(rs#)rs2234701
Submitted Batch IDSNP500CANCER_07_03_08_D
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTAQMAM
Ascertainment Samplesize530
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 7
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss105439095|allelePos=301|len=601|taxid=9606|alleles='G/A'|mol=Genomic
 GGGTGGGCCA GCTGATCTCA CCCCCAGGCG CTTTAACCCC CTGCTGTGCA GGACGGAGGG
 GCGCAGGGCC ACAGCCTCAC CCCTCCGTCG GCTCTTTCAC TTCCAGGATG AAGGTCTATG
 TGCCCACTGG CTTCTCTGCC TTCCCTTTTG AGCTAYTGCA CAYGCCTGAA AAGTGGGTRA
 GGTTCAARTA CCCAAAGCTC ATCTCCTATT CCTACATGGT TCGTGGGGGC CACTTTGCRG
 CCTTTGAGGA GCCRGAGCTG CTCGCCCAGG ACATCCGCAA GTTCCTGTCS GTGCWGGAGC
 R
 GCAATGACCC ACCCCTCTCC CCCCGCCTGC CACCTCCCCC CMCAAGTGCC CTCCAGGCTT
 TTCTTGGGGA AGATACCCCT TTTCTGAGGA ATGAGTTTGC CTCCGTCCCC TGCCCATGCT
 GGGAGCCCAC GCTCACCCCC TCACCCCTCC AAGCTCACTC CCCAACCCCC AACTCCGTGT
 GGTAAGCAAC ATGGCTTTGA TGATAAACGA CTTTACTCTA AAAGCGGCTG GAACTCAGTG
 ACATGAGCGT GCGCTGACCC CACATGGGGC CCCCTGTGCA AGCAGAGCTG GCCGGCCCCT

  Submitted Frequency for ss105439095 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
HISP3
- MULTI-NATIONAL 		98G/G=0.75510198
N/N=0.24489801
SNP500CANCER_07_03_08_BSNP500CANCER
PAC3
- MULTI-NATIONAL 		178G/G=0.95505601
A/G=0.02247200
N/N=0.02247200
SNP500CANCER_07_03_08_BSNP500CANCER
AFR3
- MULTI-NATIONAL 		152G/G=0.98684198
N/N=0.01315800
SNP500CANCER_07_03_08_BSNP500CANCER
CAUC3
- MULTI-NATIONAL 		132G/G=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
P3
- MULTI-NATIONAL 		560G/G=0.93928599
N/N=0.05357100
A/G=0.00714300
SNP500CANCER_07_03_08_BSNP500CANCER


  dbSNP summary of Genotypes for ss105439095 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
P3
- MULTI-NATIONAL 		530530G=0.99622643
A=0.00377358G/G=0.99245286
A/G=0.00754717
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
PAC3
- MULTI-NATIONAL 		174174G=0.98850572
A=0.01149425G/G=0.97701150
A/G=0.02298851
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss105439095 back to top
There is no individual genotype data for ss105439095.

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