Submitted SNP(ss) Details: ss105439096

Submitted SNP(ss) Details: ss105439096

Submitter
Handle	SNP500CANCER
Submitter SNP ID	CYP2D6-02
RefSNP(rs#)	clustering in process
Submitted Batch ID	SNP500CANCER_07_03_08_D
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	CYP2D6-02

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	540
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 14
Genotype Summary	population count: 14
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CCGGCCTACC CTGGGTAAGG GCCTGGAGCA GGAAGCAGSG GCAAGRACCT CTGGAGCAGC
 CCATACCCGC CCTGGCCTGA CTCTGCCACT GGCARCACAG TCAACACAGC AGGTTCACTC
 ACAGCAGAGG GCAAAGGCCA TCATCAGCTC CCTTTATAAG GGAAGGGTCA CGYCTCGGTG
 TGCTGAGAGT GTCCTGCCTG GTCCTCTGTG CCTGGTGGGG TGGGGNTGCC AGGTGTGTCC
 AGAGGAGCCC ATTTGGTAGT GAGGCAGGTA TGGGGCTAGA AGCACTGRTG CCCCTGGCC
 R
 TGATAGTGGC CATCTTCCTG CTCCTGGTGG ACCTGATGCA CCGGCRCCAA CGMTGGGCTG
 CACGCTACYC ACCAGGCCCC CTGCCACTGC CCRGGCTGGG CAACCTGCTG CATGTGGACT
 TCCAGAACAC ACCATACTGC TTCGACCAGG TGAGGGAGGA GGTCCTGGAG GGCGGCAGAG
 GTSCTGAGGM TSCCCYCCAN MAGCAAACAT GGRTGGTGGG TGAAACCACA GGCTGGAYCA
 GAAGCCAGGC TGAGAAGGGG AAGCAGGTTT GGGGGACKTC CTGGRGAAGG RCATTTATA

Submitted Frequency for ss105439096

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
HISP3 - MULTI-NATIONAL	98	G/G=0.93877602 N/N=0.04081600 A/G=0.02040800	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC3 - MULTI-NATIONAL	178	G/G=0.95505601 N/N=0.03370800 A/G=0.01123600	SNP500CANCER_07_03_08_B	SNP500CANCER
P3 - MULTI-NATIONAL	560	G/G=0.91428602 A/G=0.04642900 N/N=0.03571400 A/A=0.00357100	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/G=0.87096798 A/G=0.09677400 N/N=0.03225800	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR3 - MULTI-NATIONAL	152	G/G=0.92105299 N/N=0.05263200 A/G=0.02631600	SNP500CANCER_07_03_08_B	SNP500CANCER
P2 - MULTI-NATIONAL	420	G/G=0.95714301 A/G=0.04285700	SNP500CANCER_07_03_08_B	SNP500CANCER
P1 - MULTI-NATIONAL	204	G/G=0.95098001 A/G=0.03921600 N/N=0.00980400	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/G=0.95833302 A/G=0.04166700	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR2 - WEST AFRICA	120	G/G=0.94999999 A/G=0.05000000	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC3 - MULTI-NATIONAL	132	G/G=0.83333302 A/G=0.13636400 A/A=0.01515200 N/N=0.01515200	SNP500CANCER_07_03_08_B	SNP500CANCER
ASI2 - EAST ASIA	180	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC2 - MULTI-NATIONAL	120	G/G=0.89999998 A/G=0.10000000	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105439096

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	202	202	G=0.98019803	A=0.01980198	G/G=0.96039605 A/G=0.03960396	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
CAUC1 - MULTI-NATIONAL	60	60	G=0.94999999	A=0.05000000	G/G=0.89999998 A/G=0.10000000	Pr(chiSq=0.008,df=1) =1.000	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.97916669	A=0.02083333	G/G=0.95833331 A/G=0.04166667	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
P2 - MULTI-NATIONAL	420	420	G=0.97857141	A=0.02142857	G/G=0.95714283 A/G=0.04285714	Pr(chiSq=0.004,df=1) =1.000	Genotype Freq.
CAUC2 - MULTI-NATIONAL	120	120	G=0.94999999	A=0.05000000	G/G=0.89999998 A/G=0.10000000	Pr(chiSq=0.016,df=1) =1.000	Genotype Freq.
AFR2 - WEST AFRICA	120	120	G=0.97500002	A=0.02500000	G/G=0.94999999 A/G=0.05000000	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
P3 - MULTI-NATIONAL	540	540	G=0.97222221	A=0.02777778	G/G=0.94814813 A/G=0.04814815 A/A=0.00370370	Pr(chiSq=3.183,df=1) =0.100	Genotype Freq.
CAUC3 - MULTI-NATIONAL	130	130	G=0.91538459	A=0.08461539	G/G=0.84615386 A/G=0.13846155 A/A=0.01538462	Pr(chiSq=0.733,df=1) =0.403	Genotype Freq.
AFR3 - MULTI-NATIONAL	144	144	G=0.98611110	A=0.01388889	G/G=0.97222221 A/G=0.02777778	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HISP3 - MULTI-NATIONAL	94	94	G=0.98936170	A=0.01063830	G/G=0.97872341 A/G=0.02127660	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
PAC3 - MULTI-NATIONAL	172	172	G=0.99418604	A=0.00581395	G/G=0.98837209 A/G=0.01162791	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss105439096

There is no individual genotype data for ss105439096.

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