Submitted SNP(ss) Details: ss105439109

Submitted SNP(ss) Details: ss105439109

Submitter
Handle	SNP500CANCER
Submitter SNP ID	SLC28A1-11
RefSNP(rs#)	rs17222379
Submitted Batch ID	SNP500CANCER_07_03_08_D
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	SLC28A1-11

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	554
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 10
Genotype Summary	population count: 10
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTAATCCTTT GGAGTCTCAG TTTTCTTGTC TGTAAAATGA AGATAACAAT ATTTGTCATT
 CCTAACTTAG GGAGCACCAG GAAGAAATAG AAGGTCCTAT ACATATAGCC TGTGACCTTC
 TACACATAAA AGGNNNTATT ATTATTAGTG ATGACAGCAG TTATGACAAT GAGGACATAT
 CAGTGGGACA GACTACACAT GTGCCCTTGC TGCCCTGGGC CGCACTCCTT GGTCGCCAGC
 ATTTCTTCTG ACTGTCCACC TAGAACCTGC ACTCTCACTC TTGCAGATCG ATGCCACCTC
 R
 TTGATTGCAG CCTCTGTGAT GGCTGCCCCT TGTGCCTTGG CCCTCTCCAA RCTGNTCTAC
 CCGGAGGTGG AGGAGTCCAA GTTTAGGAGG GAGGAAGGMG TGAAACTGAC CTATGGGTGA
 GCACAGCAGG AGGTCCTGCA GACAGGGTAG TGGTACAAGG TGGGGGGAGC AAAGCAGAGG
 GTCCCGTTCT CTCTGTCCAT CACTGTCTTC CACTAGCCTG GGCCCMTCTC TCCACTTTTC
 CTGCTCTGGT TTGGGCTTCA TTTGCTGTCT TAGTCCATTT TCTGTTGCTT ATAACAGAAA

Submitted Frequency for ss105439109

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
P1 - MULTI-NATIONAL	204	G/G=0.99019599 A/G=0.00980400	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC3 - MULTI-NATIONAL	132	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
P3 - MULTI-NATIONAL	560	G/G=0.98214298 N/N=0.01071400 A/G=0.00714300	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR3 - MULTI-NATIONAL	152	G/G=0.94736803 A/G=0.02631600 N/N=0.02631600	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC3 - MULTI-NATIONAL	178	G/G=0.98876399 N/N=0.01123600	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/G=0.95833302 A/G=0.04166700	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP3 - MULTI-NATIONAL	98	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105439109

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	204	204	G=0.99509805	A=0.00490196	G/G=0.99019605 A/G=0.00980392	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.97916669	A=0.02083333	G/G=0.95833331 A/G=0.04166667	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
P3 - MULTI-NATIONAL	554	554	G=0.99638987	A=0.00361011	G/G=0.99277979 A/G=0.00722022	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
AFR3 - MULTI-NATIONAL	148	148	G=0.98648649	A=0.01351351	G/G=0.97297299 A/G=0.02702703	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss105439109

There is no individual genotype data for ss105439109.

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