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Submitted SNP(ss) Details: ss105439111           
Submitter
HandleSNP500CANCER
Submitter SNP IDXDH-09
RefSNP(rs#)rs34929837
Submitted Batch IDSNP500CANCER_07_03_08_D
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTAQMAM
Ascertainment Samplesize558
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 14
Genotype Summarypopulation count: 14
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss105439111|allelePos=301|len=601|taxid=9606|alleles='A/T'|mol=Genomic
 CAAATGCTAT AAACCAGGGC TTTTCCCYCT ACACGGAACT GGTTGTTAAA GATTCACCAG
 CACACCATTG CTTAAGGATG CTTAAGGATT TCAGAGAGAG GATTTGGCCC CAATTGTGCC
 AGTCATTTGC TCTGACTGTG GGCATTGGAG ACCAGCATGA AGAATCCCAC TGATGGTTAT
 CCTTTCTCCC CATGRGGGGT TCCCAGCCTT TCCCTCACTT TGGCTCCTCT TCATCTTGCT
 TCTGTACAGG YACCAGGAGA ACTGTCCAGA TGGACCACAC CTTCTTCCCT GGCTACAGAA
 W
 GACCCTGCTG AGCCCGGAGG AGATACTGCT CTCCATAGAG ATCCCCTACA GCAGGGAGGT
 GAGATGTTGG AAGTGGTTCC AGGCTCTGCT CAAATAAGTC CTATTGCCAG GCTCTAGACA
 AAGAGATCAG AATCTGCTTC AGGGACCAAC CTGAGCATCT CTCAACCTTT ACATTGATGA
 TTTTTSTCTC TGAACTTTGC CTCTGTTGAA CCAACCATAC TCCTTTCTGG ACAATGAGAA
 GTTGCAGGAT AGGAGTCCAC ATGGCATGGA CTGTGGAACC AGATAGCTAG AAACTTGGTC

  Submitted Frequency for ss105439111 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CAUC2
MULTI-NATIONAL
120A/A=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
AFR3
MULTI-NATIONAL
152A/A=0.76315802
A/T=0.21052600
N/N=0.01315800
T/T=0.01315800
SNP500CANCER_07_03_08_BSNP500CANCER
ASI2
EAST ASIA
180A/A=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
CAUC3
MULTI-NATIONAL
132A/A=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
P3
MULTI-NATIONAL
560A/A=0.93571401
A/T=0.05714300
N/N=0.00357100
T/T=0.00357100
SNP500CANCER_07_03_08_BSNP500CANCER
PAC3
MULTI-NATIONAL
178A/A=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
P2
MULTI-NATIONAL
420A/A=0.96666700
A/T=0.03333300
SNP500CANCER_07_03_08_BSNP500CANCER
CAUC1
MULTI-NATIONAL
62A/A=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
AFR1
MULTI-NATIONAL
48A/A=0.91666698
A/T=0.08333300
SNP500CANCER_07_03_08_BSNP500CANCER
HISP3
MULTI-NATIONAL
98A/A=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
AFR2
WEST AFRICA
120A/A=0.88333303
A/T=0.11666700
SNP500CANCER_07_03_08_BSNP500CANCER
PAC1
MULTI-NATIONAL
48A/A=1.00000000
SNP500CANCER_07_03_08_BSNP500CANCER
HISP1
MULTI-NATIONAL
46A/A=0.95652199
A/T=0.04347800
SNP500CANCER_07_03_08_BSNP500CANCER
P1
MULTI-NATIONAL
204A/A=0.97058803
A/T=0.02941200
SNP500CANCER_07_03_08_BSNP500CANCER


  dbSNP summary of Genotypes for ss105439111 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
P1
MULTI-NATIONAL
204204A=0.98529410
T=0.01470588A/A=0.97058821
A/T=0.02941176
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
AFR1
MULTI-NATIONAL
4848A=0.95833331
T=0.04166667A/A=0.91666669
A/T=0.08333334
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HISP1
MULTI-NATIONAL
4646A=0.97826087
T=0.02173913A/A=0.95652175
A/T=0.04347826
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
P2
MULTI-NATIONAL
420420A=0.98333335
T=0.01666667A/A=0.96666664
A/T=0.03333334
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.
AFR2
WEST AFRICA
120120A=0.94166666
T=0.05833333A/A=0.88333333
A/T=0.11666667
Pr(chiSq=0.026,df=1)
=1.000
Genotype
Freq.
P3
MULTI-NATIONAL
558558A=0.96774191
T=0.03225806A/A=0.93906808
A/T=0.05734767
T/T=0.00358423
Pr(chiSq=1.852,df=1)
=0.200
Genotype
Freq.
AFR3
MULTI-NATIONAL
150150A=0.88000000
T=0.12000000A/A=0.77333331
A/T=0.21333334
T/T=0.01333333
Pr(chiSq=0.008,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss105439111 back to top
There is no individual genotype data for ss105439111.

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