Submitted SNP(ss) Details: ss105439117

Submitted SNP(ss) Details: ss105439117

Submitter
Handle	SNP500CANCER
Submitter SNP ID	NR1I3-01
RefSNP(rs#)	rs36017137
Submitted Batch ID	SNP500CANCER_07_03_08_D
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	NR1I3-01

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	552
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 10
Genotype Summary	population count: 10
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TCCACATGGT TGGAGTTCTG GCCAAGTCTG GAGCTTTCTT CACACTCGGC TCTCAGAGCT
 CTGGGTTCAG AAAAAACTGA GCATGGTGAG AGAAGACAGT GTCAGACCGA GGCCCCCTGG
 AGGACCTTTG GAACCTCTGA TAGTCTGTCA TACCAGAGCA TGATTTTCTC TAATGTTCAG
 ACCTGGCTTC ACTGAGGAAY YGTTCAGGGG ATCAGGGCCT AGARRCAAGA CTCCCAACTG
 CCTTATTTCC CTCCTGTTTT CCTGGCAACC CCACTACTTC CTCCAAAGGT TTCTGTATGC
 R
 AAGTTGCTAM GCCTGCTGGC TGAGCTCCGG AGCATTAATG AGGCCTACGG GTACCAAATC
 CAGCACATCC AGGGCCTGTC TGCCATGATG CCGCTGCTCC AGGAGATCTG CAGCTGAGGC
 CATGCTCACT TCCTTCCCCA GCTCACCTGG AACACCCTGG ATACACTGGA GTGGGAAAAT
 GCTGGRACCA AAGATTGGGC CRRGTTCAAA GGGAGCCCAG TGGTTGCAAT GAAAGACTAA
 AGCAATAACT GCCTCTTCAT GCGGTCATGG GGWWAGTGGG GGTGACCATA GGAACAAAGT

Submitted Frequency for ss105439117

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
PAC3 - MULTI-NATIONAL	178	G/G=0.98876399 N/N=0.01123600	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR3 - MULTI-NATIONAL	152	G/G=0.97368401 A/G=0.01315800 N/N=0.01315800	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC3 - MULTI-NATIONAL	132	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP3 - MULTI-NATIONAL	98	G/G=0.95918399 N/N=0.04081600	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/G=0.95833302 A/G=0.04166700	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/G=0.96774203 N/N=0.03225800	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
P3 - MULTI-NATIONAL	560	G/G=0.98214298 N/N=0.01428600 A/G=0.00357100	SNP500CANCER_07_03_08_B	SNP500CANCER
P1 - MULTI-NATIONAL	204	G/G=0.98039198 A/G=0.00980400 N/N=0.00980400	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105439117

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	202	202	G=0.99504948	A=0.00495049	G/G=0.99009901 A/G=0.00990099	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.97916669	A=0.02083333	G/G=0.95833331 A/G=0.04166667	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
P3 - MULTI-NATIONAL	552	552	G=0.99818838	A=0.00181159	G/G=0.99637681 A/G=0.00362319	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
AFR3 - MULTI-NATIONAL	150	150	G=0.99333334	A=0.00666667	G/G=0.98666668 A/G=0.01333333	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss105439117

There is no individual genotype data for ss105439117.

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