Submitted SNP(ss) Details: ss105439121

Submitted SNP(ss) Details: ss105439121

Submitter
Handle	SNP500CANCER
Submitter SNP ID	GPX6-01
RefSNP(rs#)	rs36055795
Submitted Batch ID	SNP500CANCER_07_03_08_D
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	GPX6-01

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TAQMAM
Ascertainment Samplesize	558
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 9
Genotype Summary	population count: 10
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GAAGTGAAGC AGGAAACCTA AGCTCAAAAT ATTSCCTTCC AATTTTCTTA GAATTCTCTA
 TTGGCRCCAT AAAGCCTATT GCATAAAATC CTGCTTCCCA CAGACTATCT TTTCTTATCT
 TCCCTGTGCA CAGCCTCTTC CCTTTATCTT GAATTTCCTG TGGTAGTGAA TTGGTGGTGG
 CCATTATTTT CCATCCATGT CTTAATTTGT ATCTTGCTGG GAACAACTTT GGTTCACTGC
 AGGTATGTGT GTCCAGGTAG TGGCTTTGTC CCCAGTTTCC AGCTCTTTGA SAAAGGGGAT
 R
 TGAATGGAGA AAAAGAACAG AAGGTCTTTA CTTTCCTGAA GGTGCATGAG TATAAACCTG
 GCATGGATGG GTTAGCTAGA AATGCTCTGA AAGCAGTGGG GCTCATGTCT AGGGTTGTGG
 TTGGACTCCT TGGAAAAGAG ATGCTCAGAT AAGTTCAAGG CTCATGGCAA TATCTGCTGT
 GATGCTTTAG CTTTAMGTAG AGGAAACCCA TGATGGACAA TAGCTCTGAC ATGGACTACC
 CTCCTGTATT GAATGGAATG ATTCATTCAT TCAGCAATCA TTTATCAGAT CTCCAGTATG

Submitted Frequency for ss105439121

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
P2 - MULTI-NATIONAL	420	G/G=0.98095202 A/G=0.01904800	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC2 - MULTI-NATIONAL	120	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR3 - MULTI-NATIONAL	152	G/G=0.92105299 A/G=0.06578900 N/N=0.01315800	SNP500CANCER_07_03_08_B	SNP500CANCER
AFR2 - WEST AFRICA	120	G/G=0.93333298 A/G=0.06666700	SNP500CANCER_07_03_08_B	SNP500CANCER
CAUC3 - MULTI-NATIONAL	132	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
HISP3 - MULTI-NATIONAL	98	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
P3 - MULTI-NATIONAL	560	G/G=0.97857100 A/G=0.01785700 N/N=0.00357100	SNP500CANCER_07_03_08_B	SNP500CANCER
PAC3 - MULTI-NATIONAL	178	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER
ASI2 - EAST ASIA	180	G/G=1.00000000	SNP500CANCER_07_03_08_B	SNP500CANCER

dbSNP summary of Genotypes for ss105439121

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P2 - MULTI-NATIONAL	420	420	G=0.99047619	A=0.00952381	G/G=0.98095238 A/G=0.01904762	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
AFR2 - WEST AFRICA	120	120	G=0.96666664	A=0.03333334	G/G=0.93333334 A/G=0.06666667	Pr(chiSq=0.005,df=1) =1.000	Genotype Freq.
P3 - MULTI-NATIONAL	558	558	G=0.99103945	A=0.00896057	G/G=0.98207885 A/G=0.01792115	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
AFR3 - MULTI-NATIONAL	150	150	G=0.96666664	A=0.03333334	G/G=0.93333334 A/G=0.06666667	Pr(chiSq=0.006,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss105439121

There is no individual genotype data for ss105439121.

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