Submitted SNP(ss) Details: ss105440340

Submitted SNP(ss) Details: ss105440340

Submitter
Handle	SNP500CANCER
Submitter SNP ID	MYD88-02
RefSNP(rs#)	rs9881120
Submitted Batch ID	SNP500CANCER_07_03_08_E
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	MYD88-02

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	GOLDENGATE
Ascertainment Samplesize	200
Population	N.D.

Allele
Observed Allele	A/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GCCGCAAGCC AAGATTGCAC CACTGCACTC TAGCTTGGGC AACAGAGCGA GACCCCATYT
 AAGAAAAAAA AGAAACAAAC AAAAAGAAAA AAAATACAAA TGGCCAATAA GCACATAAAA
 ATATGCTCAA TATCMCTAAT TAGGGAAAGC AAATCAGAMC CMCCATGAGA CAGATACCMC
 TTCATACCCA TTAGGATGGC TACTATCAAA AAAAAAAAAR AAAAAAAAAW WWWAWATATA
 TATATATATA TATATATATA TATAACAAAC ATTGAAGATG TGGACAAATC GGAACCTTTG
 W
 TCACTTTTGA TGGGAATATA AAATGGYATA GCTGCTATAG TAAACAGTAT GGCAATTCCT
 CAAAAAATTA CAAACAGAAT TACCATATGA CCCAGCAATT CCACTTGGGA GTATATACCC
 CAAAGAATTG AAAGCAGGGT CTTGAAGACA TGTTTGTATA TCCATGTTTG TAGCAGCATT
 ATTCACAATA GACAAAAGGT ATAACCAAGC CAACATCTAT CAACAGATGA ATGGGTAAAT
 GAAATGTGGT ATATATGTAC AAAAGATTAT TACTTAGCTT TAAAAATGAA AGACATTCTG

Submitted Frequency for ss105440340

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
CAUC1 - MULTI-NATIONAL	62	A/A=0.80645198 A/T=0.16129000 N/N=0.03225800	SNP500CANCER_07_03_08_C	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	A/A=0.95833302 N/N=0.04166700	SNP500CANCER_07_03_08_C	SNP500CANCER
P1 - MULTI-NATIONAL	204	A/A=0.75490201 A/T=0.17647099 T/T=0.04902000 N/N=0.01960800	SNP500CANCER_07_03_08_C	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	A/A=0.58333302 A/T=0.25000000 T/T=0.16666700	SNP500CANCER_07_03_08_C	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	A/A=0.65217400 A/T=0.30434799 T/T=0.04347800	SNP500CANCER_07_03_08_C	SNP500CANCER

dbSNP summary of Genotypes for ss105440340

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	200	200	A=0.86000001	T=0.14000000	A/A=0.76999998 A/T=0.18000001 T/T=0.05000000	Pr(chiSq=6.375,df=1) =0.020	Genotype Freq.
CAUC1 - MULTI-NATIONAL	60	60	A=0.91666669	T=0.08333334	A/A=0.83333331 A/T=0.16666667	Pr(chiSq=0.040,df=1) =1.000	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	A=0.70833331	T=0.29166666	A/A=0.58333331 A/T=0.25000000 T/T=0.16666667	Pr(chiSq=3.744,df=1) =0.100	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	A=0.80434781	T=0.19565217	A/A=0.65217394 A/T=0.30434781 T/T=0.04347826	Pr(chiSq=0.025,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss105440340

There is no individual genotype data for ss105440340.

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