Submitted SNP(ss) Details: ss105440344

Submitted SNP(ss) Details: ss105440344

Submitter
Handle	SNP500CANCER
Submitter SNP ID	IL11RA-04
RefSNP(rs#)	rs4879816
Submitted Batch ID	SNP500CANCER_07_03_08_E
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	IL11RA-04

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	GOLDENGATE
Ascertainment Samplesize	200
Population	N.D.

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GGAACACACC TGGGTTTATG CTAAGAGATG AGATGGCTCA GGTTAGAGGT TGGTCACAGT
 AAAGACYAAC CATGTGATTA GAGAGTTGAG ACTTTGGGCC AGGCTGACCT CTGGGGAGGA
 AGGGGGCGCT GGAGATTGAA TTCAGGTATG TGGCCAATAA TTCAATTATG CTGATGTAAG
 GAAATCTCAA AAAAAACTCT GGACACCAAA GCTCATAAAA CTTTCTGGTT GATGAACACA
 TTGATGTCCC AGGAGGCTGA TGCACCTTAT GTCTCCACAA GGAGAAACCA CTGAGAGAAG
 M
 TCTGCATTTG AGACCCTCCT AGACTTCATC CTGTGTGTCT TTTCATTTGG CTGTTTCTGA
 TTTATACCCT TAATAAACTA ATTAAACACA GCACTTTCCT GAGTTCTGTG AGTCACTCTA
 GCAAATTATC AAAACTGACG GGTTTTGGGA ACTTCTCAGA CTTGYAGCCA GTTGGCCAGA
 AATGTGGGTG GCTTGGAGAC CCTACTTGTG GCTGGTATCT AAACTGGGGA CAGTCTTGTT
 GGGGACCTTT CCCTTAAACC TGTGGAATCT GGTGCTAACT CTACGTGGCT AGTGTCAGAA

Submitted Frequency for ss105440344

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
CAUC1 - MULTI-NATIONAL	62	C/C=0.70967698 A/C=0.25806499 N/N=0.03225800	SNP500CANCER_07_03_08_C	SNP500CANCER
P1 - MULTI-NATIONAL	204	C/C=0.66666698 A/C=0.29411799 A/A=0.01960800 N/N=0.01960800	SNP500CANCER_07_03_08_C	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	C/C=0.66666698 A/C=0.29166701 A/A=0.04166700	SNP500CANCER_07_03_08_C	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	A/C=0.52173901 C/C=0.43478301 A/A=0.04347800	SNP500CANCER_07_03_08_C	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	C/C=0.83333302 A/C=0.12500000 N/N=0.04166700	SNP500CANCER_07_03_08_C	SNP500CANCER

dbSNP summary of Genotypes for ss105440344

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	200	200	C=0.82999998	A=0.17000000	C/C=0.68000001 A/C=0.30000001 A/A=0.02000000	Pr(chiSq=0.398,df=1) =0.584	Genotype Freq.
CAUC1 - MULTI-NATIONAL	60	60	C=0.86666667	A=0.13333334	C/C=0.73333335 A/C=0.26666668	Pr(chiSq=0.177,df=1) =0.752	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	C=0.81250000	A=0.18750000	C/C=0.66666669 A/C=0.29166666 A/A=0.04166667	Pr(chiSq=0.044,df=1) =1.000	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	C=0.69565219	A=0.30434781	A/C=0.52173913 C/C=0.43478259 A/A=0.04347826	Pr(chiSq=1.239,df=1) =0.273	Genotype Freq.
PAC1 - MULTI-NATIONAL	46	46	C=0.93478262	A=0.06521739	C/C=0.86956519 A/C=0.13043478	Pr(chiSq=0.014,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss105440344

There is no individual genotype data for ss105440344.

Disclaimer Privacy statement