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Submitted SNP(ss) Details: ss105440345           
Submitter
HandleSNP500CANCER
Submitter SNP IDSTAT2-02
RefSNP(rs#)rs2066808
Submitted Batch IDSNP500CANCER_07_03_08_E
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodGOLDENGATE
Ascertainment Samplesize198
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss105440345|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 CTGTTTTCAG CTAAGGAACT GGATTTAGAG TAGTCAAGTT TTGTACCTAA GGTACRTGGC
 TAATGATACA GGTCTGTTAG ATTCCGTAGC CCTGATTTTA ACCACCCTAC TGCCTCTCAA
 GAATTACTAG GTATTGTTCT CATTTATAGA TGATAAATCT GAGGCTCAGA AAAGTTAGGC
 CACTTGCCTA AGGTCCCCCA GCCAGGATTC AAACTCCAGG AGGCCTGATT CCAAACCCAT
 GCTCTTTAGC CCTCCGCCCT ACTGCCTTCT TAGACTAGCT TCTGCTTATT CTACCATTCC
 Y
 GATTTCATTT GAACCACTGA GCCCTGCCCC TTTGTCTGTC TTTGGGTATC CAGRCAGGTG
 GATGAACTGC AACAACCGCT GGAGCTTAAG CCAGAGCCAG AGCTGGAGTC ATTAGAGCTG
 GAACTAGGGC TGGTGCCAGA GCCAGAGCTC AGCCTGGACT TAGAGCCACT GCTGAAGGCA
 GGGCTGGATC TGGGGCCAGA GCTAGAGTCT GTGCTGGAGT CCACTCTGGA GCCTGTGATA
 GAGCCCACAC TATGCATGGT ATCACAAACA GTGCCAGAGC CAGACCAAGG ACCTGTATCA

  Submitted Frequency for ss105440345 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PAC1
MULTI-NATIONAL
48T/T=0.79166698
C/T=0.12500000
C/C=0.04166700
N/N=0.04166700
SNP500CANCER_07_03_08_CSNP500CANCER
HISP1
MULTI-NATIONAL
46T/T=0.73913002
C/T=0.21739100
C/C=0.04347800
SNP500CANCER_07_03_08_CSNP500CANCER
CAUC1
MULTI-NATIONAL
62T/T=0.77419400
C/T=0.16129000
N/N=0.06451600
SNP500CANCER_07_03_08_CSNP500CANCER
AFR1
MULTI-NATIONAL
48C/T=0.54166698
C/C=0.25000000
T/T=0.20833300
SNP500CANCER_07_03_08_CSNP500CANCER
P1
MULTI-NATIONAL
204T/T=0.63725501
C/T=0.25490201
C/C=0.07843100
N/N=0.02941200
SNP500CANCER_07_03_08_CSNP500CANCER


  dbSNP summary of Genotypes for ss105440345 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
P1
MULTI-NATIONAL
198198T=0.78787881
C=0.21212122T/T=0.65656567
C/T=0.26262626
C/C=0.08080808
Pr(chiSq=4.546,df=1)
=0.050
Genotype
Freq.
CAUC1
MULTI-NATIONAL
5858T=0.91379309
C=0.08620690T/T=0.82758623
C/T=0.17241380
Pr(chiSq=0.043,df=1)
=1.000
Genotype
Freq.
AFR1
MULTI-NATIONAL
4848C=0.52083331
T=0.47916666C/T=0.54166669
C/C=0.25000000
T/T=0.20833333
Pr(chiSq=0.174,df=1)
=0.752
Genotype
Freq.
HISP1
MULTI-NATIONAL
4646T=0.84782606
C=0.15217391T/T=0.73913044
C/T=0.21739130
C/C=0.04347826
Pr(chiSq=0.571,df=1)
=0.479
Genotype
Freq.
PAC1
MULTI-NATIONAL
4646T=0.89130437
C=0.10869565T/T=0.82608694
C/T=0.13043478
C/C=0.04347826
Pr(chiSq=2.457,df=1)
=0.150
Genotype
Freq.

  Submitted individual genotype for ss105440345 back to top
There is no individual genotype data for ss105440345.

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