Submitted SNP(ss) Details: ss105440346

Submitted SNP(ss) Details: ss105440346

Submitter
Handle	SNP500CANCER
Submitter SNP ID	RAC2-05
RefSNP(rs#)	rs6572
Submitted Batch ID	SNP500CANCER_07_03_08_E
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	RAC2-05

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	GOLDENGATE
Ascertainment Samplesize	200
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GCCTGACTCC CCTCTGGAAA CTGCAGGCCA GATGGTTGCT GCCACAACTT GTGTACCTTC
 AGGGATGGGG CTCTTACTCC CTCCTGAGGC CAGCTGCTCT AATATCGATG GTCCTGCTTG
 CCAGAGAGTT CCTCTACCCA GCAAAAATGA GTGTCTCAGA AGTGTGCTCC TCTGGCCTCA
 GTTCTCCTCT TTTGGAACAA CATAAAACAA ATTTAATTTT CTACGCCTCT GGGGATATCT
 GCTCAGCCAA TGGAAAATCT GGGTTCAACC AGCCCCTGCC ATTTCTTAAG ACTTTYTGCT
 S
 CACTCACAGG ATCCTGAGCT GCACTTACCT GTGAGAGTCT TCAAACTTTT AAACCTTGCC
 AGTCAGGACT TTTGCTATTG CAAATASAAA ACCCAACTCA ACCTGCTTAA GCAGAAAATA
 AATTTATTGA TTCAAGTTTG GAGATATCGT GATTTCAGGT GCAGCTTGAT CAAGGKATTC
 AAATGATGTC ATCGAGGCTT GTTTAGCTCT GGGCTCTGCC TTCTGCTGGC TGGTTCATTC
 TCAGGCAGGC GACTTAGGGC TTCATCCTCC CAAGTTCAAG TTCAGGGYYT CATCCTYCCA

Submitted Frequency for ss105440346

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
AFR1 - MULTI-NATIONAL	48	G/G=0.62500000 C/G=0.33333299 C/C=0.04166700	SNP500CANCER_07_03_08_C	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/G=0.41666701 C/G=0.29166701 C/C=0.25000000 N/N=0.04166700	SNP500CANCER_07_03_08_C	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	C/G=0.65217400 C/C=0.30434799 G/G=0.04347800	SNP500CANCER_07_03_08_C	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	C/G=0.48387101 C/C=0.29032299 G/G=0.19354799 N/N=0.03225800	SNP500CANCER_07_03_08_C	SNP500CANCER
P1 - MULTI-NATIONAL	204	C/G=0.44117600 G/G=0.31372601 C/C=0.22549000 N/N=0.01960800	SNP500CANCER_07_03_08_C	SNP500CANCER

dbSNP summary of Genotypes for ss105440346

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	200	200	G=0.54500002	C=0.45500001	C/G=0.44999999 G/G=0.31999999 C/C=0.23000000	Pr(chiSq=0.858,df=1) =0.371	Genotype Freq.
CAUC1 - MULTI-NATIONAL	60	60	C=0.55000001	G=0.44999999	C/G=0.50000000 C/C=0.30000001 G/G=0.20000000	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.79166669	C=0.20833333	G/G=0.62500000 C/G=0.33333334 C/C=0.04166667	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	C=0.63043481	G=0.36956522	C/G=0.65217394 C/C=0.30434781 G/G=0.04347826	Pr(chiSq=3.673,df=1) =0.100	Genotype Freq.
PAC1 - MULTI-NATIONAL	46	46	G=0.58695650	C=0.41304347	G/G=0.43478259 C/G=0.30434781 C/C=0.26086956	Pr(chiSq=3.188,df=1) =0.100	Genotype Freq.

Submitted individual genotype for ss105440346

There is no individual genotype data for ss105440346.

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