Submitted SNP(ss) Details: ss105440347

Submitted SNP(ss) Details: ss105440347

Submitter
Handle	SNP500CANCER
Submitter SNP ID	CD46-08
RefSNP(rs#)	rs2761435
Submitted Batch ID	SNP500CANCER_07_03_08_E
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	CD46-08

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	GOLDENGATE
Ascertainment Samplesize	200
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AAAACATGTT TTCCTCACGA GATCCCAGGA GTTAAAAGAA GATAGATCCC TCTCAAAATC
 AAAGGCTGTG TTCTGTTTTG CATTGTGTTA TCTGATGGTT TTGAGTTTTG GGGTATCAAA
 AATTACTTCC CATTATGAGA RAGCTTTGGT GTGTAGGAAC TAGGTAGGAA ATATACTTTA
 AGGGATGGCT AATAGTAGTT ATAAATCAGA GAAGCATGCT CTTGGCCACC TGAAAGATAT
 GGAAACATCC CCACCCCACC CCACCCCCAA CTAAGAGATG AGACTCCCAT GGGGGATGGG
 S
 TAATTACAAA ATAAGCCGAT TGGCTTTGGG GTGCCTTGCA ATAAAATACA TGATAGAAGC
 ACTACACTGT CTTCCCCCAT AGTATCTATA TGGTCTTTTC ATAAATTGAG CATTGAAATA
 GAAGTATAGC AAGGAGGTCT TAAAACACTA ATCTGCCCTT TAGTAAAAGG GTTATAAAAG
 GTTTGTAAAG CTTTTACCTC ATGGTCAAAT TGGTTAAGAT TAGATGGAAT AATCTATAAG
 GTTTCATTTA AACAAATTGG GGTTAACATT AACAAACTAA TGCAAGGGTA AAATTTGTCT

Submitted Frequency for ss105440347

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
P1 - MULTI-NATIONAL	204	C/G=0.42156899 C/C=0.32352901 G/G=0.23529400 N/N=0.01960800	SNP500CANCER_07_03_08_C	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	C/G=0.41935501 G/G=0.29032299 C/C=0.25806499 N/N=0.03225800	SNP500CANCER_07_03_08_C	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	C/C=0.54166698 C/G=0.45833299	SNP500CANCER_07_03_08_C	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	C/G=0.41666701 G/G=0.37500000 C/C=0.16666700 N/N=0.04166700	SNP500CANCER_07_03_08_C	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	C/G=0.39130399 C/C=0.34782600 G/G=0.26087001	SNP500CANCER_07_03_08_C	SNP500CANCER

dbSNP summary of Genotypes for ss105440347

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	200	200	C=0.54500002	G=0.45500001	C/G=0.43000001 C/C=0.33000001 G/G=0.23999999	Pr(chiSq=1.768,df=1) =0.200	Genotype Freq.
CAUC1 - MULTI-NATIONAL	60	60	G=0.51666665	C=0.48333332	C/G=0.43333334 G/G=0.30000001 C/C=0.26666668	Pr(chiSq=0.526,df=1) =0.479	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	C=0.77083331	G=0.22916667	C/C=0.54166669 C/G=0.45833334	Pr(chiSq=0.861,df=1) =0.371	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	C=0.54347825	G=0.45652175	C/G=0.39130434 C/C=0.34782609 G/G=0.26086956	Pr(chiSq=1.028,df=1) =0.317	Genotype Freq.
PAC1 - MULTI-NATIONAL	46	46	G=0.60869563	C=0.39130434	C/G=0.43478259 G/G=0.39130434 C/C=0.17391305	Pr(chiSq=0.175,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss105440347

There is no individual genotype data for ss105440347.

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