Submitted SNP(ss) Details: ss105440349

Submitted SNP(ss) Details: ss105440349

Submitter
Handle	SNP500CANCER
Submitter SNP ID	STAT6-05
RefSNP(rs#)	rs703817
Submitted Batch ID	SNP500CANCER_07_03_08_E
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	STAT6-05

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	GOLDENGATE
Ascertainment Samplesize	198
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TGGAAGGGAA GTTCAGGCTC TGAGACACRC CCCAACATGC CTGCACCTGC AGCGCGCACA
 CGCACGCACA CACACATACA GAGCTCTCTG AGGGTGATGG GGCTGAGCAG GAGGGGGGCT
 GGGTAAGAGC ACAGGTTAGG GCATGGAAGG CTTCTCCGCC CATTCTGACC CAGGGCCTAG
 GACGGATAGG CAGGAACATA CAGACACATT TACACTAGAG GCCAGGGATA GAGGATATTG
 GGTCTCAGCC CTAGGGGAAT GGGAAGCAGC TCAAGGGACC CTGGGTGGGA GCATAGGAGG
 R
 GTCTGGACAT GTGGTTACTA GTACAGGTTT TGCCCTGATT AAAAAATCTC CCAAAGCCCC
 AAATTCCTGT TAGCCAGGTG GAGGCTTCTG ATACGTGTAT GAGACTATGC AAAAGTACRA
 GGGCTGAGAT TCTTCGTGTA TAGCTGTGTG AACGTGTATG TACCTAGGAT ATGTTAAATR
 TATAGCTGGC ACCTTAGTTG CATGACCACA TRGAACATGT GTCTATCTGC TTTTGCCTAC
 GTGACAACAC AAATTTGGGA GGGTGAGACA CTGCACAGAA KACAGCAGCA AGTGTGCTGG

Submitted Frequency for ss105440349

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
PAC1 - MULTI-NATIONAL	48	G/G=0.62500000 A/G=0.25000000 A/A=0.08333300 N/N=0.04166700	SNP500CANCER_07_03_08_C	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	G/G=0.47826099 A/G=0.30434799 A/A=0.21739100	SNP500CANCER_07_03_08_C	SNP500CANCER
P1 - MULTI-NATIONAL	204	G/G=0.50000000 A/G=0.29411799 A/A=0.17647099 N/N=0.02941200	SNP500CANCER_07_03_08_C	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/G=0.79166698 A/G=0.16666700 A/A=0.04166700	SNP500CANCER_07_03_08_C	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	A/G=0.41935501 A/A=0.32258099 G/G=0.19354799 N/N=0.06451600	SNP500CANCER_07_03_08_C	SNP500CANCER

dbSNP summary of Genotypes for ss105440349

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	198	198	G=0.66666669	A=0.33333334	G/G=0.51515150 A/G=0.30303031 A/A=0.18181819	Pr(chiSq=10.023,df=1) =0.003	Genotype Freq.
CAUC1 - MULTI-NATIONAL	58	58	A=0.56896549	G=0.43103448	A/G=0.44827586 A/A=0.34482759 G/G=0.20689656	Pr(chiSq=0.215,df=1) =0.655	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.87500000	A=0.12500000	G/G=0.79166669 A/G=0.16666667 A/A=0.04166667	Pr(chiSq=1.361,df=1) =0.251	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	G=0.63043481	A=0.36956522	G/G=0.47826087 A/G=0.30434781 A/A=0.21739130	Pr(chiSq=2.767,df=1) =0.100	Genotype Freq.
PAC1 - MULTI-NATIONAL	46	46	G=0.78260869	A=0.21739130	G/G=0.65217394 A/G=0.26086956 A/A=0.08695652	Pr(chiSq=1.252,df=1) =0.273	Genotype Freq.

Submitted individual genotype for ss105440349

There is no individual genotype data for ss105440349.

Disclaimer Privacy statement