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Submitted SNP(ss) Details: ss105440351           
Submitter
HandleSNP500CANCER
Submitter SNP IDNCF4-18
RefSNP(rs#)rs729749
Submitted Batch IDSNP500CANCER_07_03_08_E
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodGOLDENGATE
Ascertainment Samplesize200
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss105440351|allelePos=302|len=602|taxid=9606|alleles='C/T'|mol=Genomic
 CAGTATTGGT GGGGGAGCCC ACGTACCATN CCCTGGGTAT GGCTTTGGGA ACTGGGGCTG
 GCTCTCTGGC TCTRATGGCC CCATCTTCAA TCCCTAAAGG CCTGGTCTGG GGAGTAAAAC
 AGGATGCGTC CTTAGGGTTC CAGAGATAGG AGCAGGAGCA AYGGAGAAGG TAAAAGAGCC
 ACACTAGGAA TTGACAAGTC TTCATTTAAT GCTCCAAGCC CCACAGGTGA ATGTCTATGC
 CAGGAGTTAA AATACAAAGG TGAATTCCAT CCAGTGTCTG CCCCCAAGGT ACCCACTGTC
 C
 Y
 ATGGGAATGC CAACAGGTGG ATCATAAGAT CACACGGAGA CATATGTGTG CCTCCATCAT
 GGGGGTGTGG CCAAGCAGGC CGCAGGTTGC TCATATAGCA TCTTTGTGCA AACTAGAGTA
 GGCCTCCTCT GGGACAACTC ACTCCCTTAC GTGAACATGG GCTGGATTTT AGCTACACTC
 ATGGGTCTTG GCTGGGGGCC CTTGTGTATT CTCCGACTTR CAAACTCTGC ATCTCTATGA
 GATGGGAGCG TAGAGGAAGG AGCATCTTAA AGGCAGAGGC CAAGGTGGTC AGGAAAGGAC

  Submitted Frequency for ss105440351 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
AFR1
MULTI-NATIONAL
48C/T=0.54166698
C/C=0.45833299
SNP500CANCER_07_03_08_CSNP500CANCER
PAC1
MULTI-NATIONAL
48C/C=0.58333302
C/T=0.33333299
N/N=0.04166700
T/T=0.04166700
SNP500CANCER_07_03_08_CSNP500CANCER
CAUC1
MULTI-NATIONAL
62C/C=0.58064502
C/T=0.35483900
N/N=0.03225800
T/T=0.03225800
SNP500CANCER_07_03_08_CSNP500CANCER
HISP1
MULTI-NATIONAL
46C/C=0.52173901
C/T=0.34782600
T/T=0.13043500
SNP500CANCER_07_03_08_CSNP500CANCER
P1
MULTI-NATIONAL
204C/C=0.53921598
C/T=0.39215699
T/T=0.04902000
N/N=0.01960800
SNP500CANCER_07_03_08_CSNP500CANCER


  dbSNP summary of Genotypes for ss105440351 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
P1
MULTI-NATIONAL
200200C=0.75000000
T=0.25000000C/C=0.55000001
C/T=0.40000001
T/T=0.05000000
Pr(chiSq=0.444,df=1)
=0.527
Genotype
Freq.
CAUC1
MULTI-NATIONAL
6060C=0.78333336
T=0.21666667C/C=0.60000002
C/T=0.36666667
T/T=0.03333334
Pr(chiSq=0.193,df=1)
=0.752
Genotype
Freq.
AFR1
MULTI-NATIONAL
4848C=0.72916669
T=0.27083334C/T=0.54166669
C/C=0.45833334
Pr(chiSq=1.551,df=1)
=0.251
Genotype
Freq.
HISP1
MULTI-NATIONAL
4646C=0.69565219
T=0.30434781C/C=0.52173913
C/T=0.34782609
T/T=0.13043478
Pr(chiSq=0.733,df=1)
=0.403
Genotype
Freq.
PAC1
MULTI-NATIONAL
4646C=0.78260869
T=0.21739130C/C=0.60869563
C/T=0.34782609
T/T=0.04347826
Pr(chiSq=0.011,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss105440351 back to top
There is no individual genotype data for ss105440351.

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