Submitted SNP(ss) Details: ss105440354

Submitted SNP(ss) Details: ss105440354

Submitter
Handle	SNP500CANCER
Submitter SNP ID	MASP1-48
RefSNP(rs#)	rs696405
Submitted Batch ID	SNP500CANCER_07_03_08_E
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	MASP1-48

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	GOLDENGATE
Ascertainment Samplesize	200
Population	N.D.

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CAGGGGCAGA ACTGAAAGGT GAACTCAATA CTTTTGATGG CAACATAAGC AATGCMGAGC
 CATTTTTTTA CCATGATCAT GTTTTATGCC ATCCTCAGGA ACCTTGAATC CTAGAGTATC
 ACATTTTTTT AAAGACCCTC CCTCAGTAAY CACTGTCCTC TAGAACCCAA ATCTGGCTTC
 AGCATAGCCA AAGCTATAAC ATTTCAAGAA GATCCCTTTC TCCCAGGAAA GACTGGGTGG
 GGAATGGCAG CAGCCAAWAA GAATGACCCC ATTTCAATGA GCTCTCCCAA GAGCTTGTTG
 M
 ATCATTCAGC CTCTTAAAAG GACAAGAACA CATCAAGGAG AAAAACAGAT TTCAGTGGAG
 ATATGAAGCT AGACTCAGGA TAAATAGGTT CGAGTTCTGG CTTTCCCATT AACAACCTTG
 AGTAAGTCAC TTGCCTTCTC TGAACTTCCA TGTTTCCATC TGTAAATTAG CTGTTCTCCA
 AGGTCTCTCC AGATCTGATC TGTGACCTGC AGTGTGCCAC TGGCACCTTG GTTGGAGAAA
 GGTASCGTTT AATGCTGGCT TTGTTGTGAC CATGGACCAA GCCATAGACG TGTCCCTTAC

Submitted Frequency for ss105440354

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
HISP1 - MULTI-NATIONAL	46	A/C=0.52173901 A/A=0.26087001 C/C=0.21739100	SNP500CANCER_07_03_08_C	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	A/C=0.54166698 A/A=0.33333299 C/C=0.12500000	SNP500CANCER_07_03_08_C	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	A/C=0.48387101 C/C=0.29032299 A/A=0.19354799 N/N=0.03225800	SNP500CANCER_07_03_08_C	SNP500CANCER
P1 - MULTI-NATIONAL	204	A/C=0.49019599 C/C=0.25490201 A/A=0.23529400 N/N=0.01960800	SNP500CANCER_07_03_08_C	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	A/C=0.41666701 C/C=0.37500000 A/A=0.16666700 N/N=0.04166700	SNP500CANCER_07_03_08_C	SNP500CANCER

dbSNP summary of Genotypes for ss105440354

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	200	200	C=0.50999999	A=0.49000001	A/C=0.50000000 C/C=0.25999999 A/A=0.23999999	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
CAUC1 - MULTI-NATIONAL	60	60	C=0.55000001	A=0.44999999	A/C=0.50000000 C/C=0.30000001 A/A=0.20000000	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	A=0.60416669	C=0.39583334	A/C=0.54166669 A/A=0.33333334 C/C=0.12500000	Pr(chiSq=0.421,df=1) =0.527	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	A=0.52173913	C=0.47826087	A/C=0.52173913 A/A=0.26086956 C/C=0.21739130	Pr(chiSq=0.048,df=1) =1.000	Genotype Freq.
PAC1 - MULTI-NATIONAL	46	46	C=0.60869563	A=0.39130434	A/C=0.43478259 C/C=0.39130434 A/A=0.17391305	Pr(chiSq=0.175,df=1) =0.752	Genotype Freq.

Submitted individual genotype for ss105440354

There is no individual genotype data for ss105440354.

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