Submitted SNP(ss) Details: ss105440357

Submitted SNP(ss) Details: ss105440357

Submitter
Handle	SNP500CANCER
Submitter SNP ID	IL8RA-14
RefSNP(rs#)	rs1008562
Submitted Batch ID	SNP500CANCER_07_03_08_E
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	IL8RA-14

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	GOLDENGATE
Ascertainment Samplesize	200
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CTCAGAGACA GGACCTAGAT CAAGCTTCAG ATGGGGATCA GTGATTGATG TTGAAATCAA
 AGCTGGGATG GGGGCAGGGA TGGGGTGGCA GCTTGGGATG AGGTCAGAGA AGGATGAATG
 CCAGGAATCG GTAGAGATCT ACAAGGAGGG AGAGTGAGAG TCAGGGTCAC AGTGAGGTGT
 TGGGAACAGG GAGATTCAAC ATGGAGCTGG GACCAGATAT GGAGAGTGAG ACTTTGGAAT
 GGGATAAGYG TGGGGGAGTG GTGAGGCTCA GGGAGRGGGT GTCAGGCCTG GAATGAATAT
 S
 AGGGAAGGCT TAGTAGCTAT AAGGCTGGAG CAGAAGAYGT GCCTGGTAGG GTCACCATCC
 TATCTGGAGC ATCATCTAAG ATCYTCTTCC GGGGCCAAAA GACAGAGGCT CCTCAGTCTG
 TCCTGCTTAA GACTCTCCAG GCAGGTGAGT GAGGAGGGAG TTAGGCACTC GAGCCCTAAG
 AGATAGAYCT GATTCAGCAG AGAAGACAAG AAGGATGCAA AGGATGCACA GAGAATCTAG
 GGCAGAAGGC TGAGAACTGG GGNCYTCCTT TTCCKCTCCT CCCTCCGCTG ATCTCCCTCC
 A

Submitted Frequency for ss105440357

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
HISP1 - MULTI-NATIONAL	46	C/C=0.52173901 G/G=0.30434799 C/G=0.17391300	SNP500CANCER_07_03_08_C	SNP500CANCER
P1 - MULTI-NATIONAL	204	C/C=0.46078399 C/G=0.29411799 G/G=0.22549000 N/N=0.01960800	SNP500CANCER_07_03_08_C	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	C/G=0.45161301 C/C=0.38709700 G/G=0.12903200 N/N=0.03225800	SNP500CANCER_07_03_08_C	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/G=0.41666701 C/G=0.29166701 C/C=0.25000000 N/N=0.04166700	SNP500CANCER_07_03_08_C	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	C/C=0.70833302 C/G=0.20833300 G/G=0.08333300	SNP500CANCER_07_03_08_C	SNP500CANCER

dbSNP summary of Genotypes for ss105440357

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	200	200	C=0.62000000	G=0.38000000	C/C=0.47000000 C/G=0.30000001 G/G=0.23000000	Pr(chiSq=13.201,df=1) =0.001	Genotype Freq.
CAUC1 - MULTI-NATIONAL	60	60	C=0.63333333	G=0.36666667	C/G=0.46666667 C/C=0.40000001 G/G=0.13333334	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	C=0.81250000	G=0.18750000	C/C=0.70833331 C/G=0.20833333 G/G=0.08333334	Pr(chiSq=2.400,df=1) =0.150	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	C=0.60869563	G=0.39130434	C/C=0.52173913 G/G=0.30434781 C/G=0.17391305	Pr(chiSq=9.272,df=1) =0.003	Genotype Freq.
PAC1 - MULTI-NATIONAL	46	46	G=0.58695650	C=0.41304347	G/G=0.43478259 C/G=0.30434781 C/C=0.26086956	Pr(chiSq=3.188,df=1) =0.100	Genotype Freq.

Submitted individual genotype for ss105440357

There is no individual genotype data for ss105440357.

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