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Submitted SNP(ss) Details: ss105440364           
Submitter
HandleSNP500CANCER
Submitter SNP IDSFRS15-02
RefSNP(rs#)rs2833475
Submitted Batch IDSNP500CANCER_07_03_08_E
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodGOLDENGATE
Ascertainment Samplesize200
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 11
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss105440364|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 TCATTTTTTT CTAGTAATAA GACGGGGTGT AAATTTTCTA AGTGTGCACC TGCAGTATGC
 TTAGTTAGCT TGAATAGTTA CTGATAGTGA ATGTATTTAT CTCATTAGGA CTTAGCACAC
 TGTGTTTCTC AAATGTATTT GGAGTGGGAA GACAGCTTCT AATGAAAGCT ACAGGAGATT
 TTGACATACT CTTTGAAAAT TGGTATTACC ATTACTATTT TATTTCCCAG TTTATTCTGG
 CCTCTACCTG TATTAGATAC TTTAAAAATG TCTTTGCAAT TGCTTGCCTT AGGTTGTTAC
 Y
 AGGCCTCACA CTGGGTTTGT GACAGAGTGG CAAACTATGA AATTTGAAGA TTGTGGGTTG
 AATTTTATTT TGCTTTAAGC GCCACAGAAC ACAGCTGAAA CTGGAGTGCC ATCTTCGGTG
 GTGTTTACAT TTTTATTTTT GTCGTCTTTT AGGCACTCAA GGAGTTGCCC CTGGTCCTGT
 AATTGGACTT CAGGCACCAT MTACTGGTCT TCTTGGCGCC CGGCCCGGTC TCATCCCACT
 CCAGCGCCCT CCAGGAATGC CCCCACCTCA CTTACAGCGG TTCCCTTTGA TGCCGCCCCG

  Submitted Frequency for ss105440364 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
AFR1
MULTI-NATIONAL
48T/T=0.50000000
C/T=0.29166701
C/C=0.20833300
SNP500CANCER_07_03_08_CSNP500CANCER
P1
MULTI-NATIONAL
204T/T=0.58823502
C/T=0.27451000
C/C=0.11764700
N/N=0.01960800
SNP500CANCER_07_03_08_CSNP500CANCER
CAUC1
MULTI-NATIONAL
62T/T=0.83871001
C/T=0.12903200
N/N=0.03225800
SNP500CANCER_07_03_08_CSNP500CANCER
PAC1
MULTI-NATIONAL
48C/T=0.45833299
C/C=0.25000000
T/T=0.25000000
N/N=0.04166700
SNP500CANCER_07_03_08_CSNP500CANCER
HISP1
MULTI-NATIONAL
46T/T=0.69565201
C/T=0.26087001
C/C=0.04347800
SNP500CANCER_07_03_08_CSNP500CANCER


  dbSNP summary of Genotypes for ss105440364 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
P1
MULTI-NATIONAL
200200T=0.74000001
C=0.25999999T/T=0.60000002
C/T=0.28000000
C/C=0.12000000
Pr(chiSq=7.417,df=1)
=0.010
Genotype
Freq.
CAUC1
MULTI-NATIONAL
6060T=0.93333334
C=0.06666667T/T=0.86666667
C/T=0.13333334
Pr(chiSq=0.020,df=1)
=1.000
Genotype
Freq.
AFR1
MULTI-NATIONAL
4848T=0.64583331
C=0.35416666T/T=0.50000000
C/T=0.29166666
C/C=0.20833333
Pr(chiSq=3.153,df=1)
=0.100
Genotype
Freq.
HISP1
MULTI-NATIONAL
4646T=0.82608694
C=0.17391305T/T=0.69565219
C/T=0.26086956
C/C=0.04347826
Pr(chiSq=0.195,df=1)
=0.752
Genotype
Freq.
PAC1
MULTI-NATIONAL
4646C=0.50000000C/T=0.47826087
T/T=0.26086956
C/C=0.26086956
Pr(chiSq=0.043,df=1)
=1.000
Genotype
Freq.
HapMap-CEU120120T=0.90833336
C=0.09166667T/T=0.83333331
C/T=0.15000001
C/C=0.01666667
Pr(chiSq=0.591,df=1)
=0.479
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.53333336
T=0.46666667C/T=0.40000001
C/C=0.33333334
T/T=0.26666668
Pr(chiSq=1.736,df=1)
=0.200
Genotype
Freq.
HapMap-JPT8888T=0.61363637
C=0.38636363C/T=0.40909091
T/T=0.40909091
C/C=0.18181819
Pr(chiSq=0.829,df=1)
=0.371
Genotype
Freq.
HapMap-YRI120120T=0.80833334
C=0.19166666T/T=0.66666669
C/T=0.28333333
C/C=0.05000000
Pr(chiSq=0.440,df=1)
=0.527
Genotype
Freq.

  Submitted individual genotype for ss105440364 back to top
There is no individual genotype data for ss105440364.

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