Submitted SNP(ss) Details: ss105441728

Submitted SNP(ss) Details: ss105441728

Submitter
Handle	SNP500CANCER
Submitter SNP ID	STAR-31
RefSNP(rs#)	rs72552290
Submitted Batch ID	SNP500CANCER_07_03_08_F
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	STAR-31

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	EPOCH
Ascertainment Samplesize	204
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 10
Genotype Summary	population count: 10
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GCCTGACCAC CCCAGATGGA AGGCAGATTT CTGGACCCTG GAGCACTGCC ATGGGAGTTG
 AGGGCCTGGC TCTAGTTCAG GTCYCTGCTA GAATCCTGTG TGYTCCTGAG CAAGTCACTT
 CCCTCTCCAA ACCAACTTAC TCATTTGAGA CAAGATGAGG GSGTNGNAGT GGTCCATCTC
 TAAGGGGCTT TCCAGCTCCT AGRCAAGGGT TATTCCCTTC TGCAGGGCTG AGGCAACAGG
 CTGTGATGGC CATCAGCCAG GAGCTGAACC GGAGGGCCCT NRGGGGGCCC CACCCCTAGC
 ACRTGGATTA ACCA
 R
 GTTCKGCGGC GGAGCTCTCT ACTCGGTAAG TGCTGAGGCT TCTGGGCTCC TGGTGCTGCY
 GGCAGGAGGT TCCCTGGAGG GTGATGTGGT GCATGTGGCT TTGGCTCCCC TCCTGCCATT
 CCTTCATTTT GAGAGGAYGT CCCCAGCCTA GAGTTCCTCA AGGCCAGATC CCTCTCTGGT
 CACCTGGGGC GGCTGTGATT AACTCSACCA GCAGGCTGGC CCCTATGGCT TTAGTCCGGG
 CTCTTCAGAG CAATGMGCAG ACCCAGAGCT CCAGGGATGA GAGCTGG

Submitted Frequency for ss105441728

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
P1 - MULTI-NATIONAL	204	G/G=0.96078402 A/G=0.03921600	SNP500CANCER_07_03_08_D	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	G/G=1.00000000	SNP500CANCER_07_03_08_D	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/G=0.83333302 A/G=0.16666700	SNP500CANCER_07_03_08_D	SNP500CANCER
AFR3 - MULTI-NATIONAL	152	G/G=0.88157898 A/G=0.07894700 N/N=0.02631600 A/A=0.01315800	SNP500CANCER_07_03_08_D	SNP500CANCER
HISP3 - MULTI-NATIONAL	98	G/G=0.97959203 N/N=0.02040800	SNP500CANCER_07_03_08_D	SNP500CANCER
CAUC3 - MULTI-NATIONAL	132	G/G=0.81818199 N/N=0.18181799	SNP500CANCER_07_03_08_D	SNP500CANCER
P3 - MULTI-NATIONAL	560	G/G=0.90357101 N/N=0.07142900 A/G=0.02142900 A/A=0.00357100	SNP500CANCER_07_03_08_D	SNP500CANCER
PAC3 - MULTI-NATIONAL	178	G/G=0.94382000 N/N=0.05618000	SNP500CANCER_07_03_08_D	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/G=1.00000000	SNP500CANCER_07_03_08_D	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/G=1.00000000	SNP500CANCER_07_03_08_D	SNP500CANCER

dbSNP summary of Genotypes for ss105441728

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	204	204	G=0.98039216	A=0.01960784	G/G=0.96078432 A/G=0.03921569	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.91666669	A=0.08333334	G/G=0.83333331 A/G=0.16666667	Pr(chiSq=0.032,df=1) =1.000	Genotype Freq.
P3 - MULTI-NATIONAL	520	520	G=0.98461539	A=0.01538462	G/G=0.97307694 A/G=0.02307692 A/A=0.00384615	Pr(chiSq=14.762,df=1) =0.001	Genotype Freq.
AFR3 - MULTI-NATIONAL	148	148	G=0.94594592	A=0.05405406	G/G=0.90540540 A/G=0.08108108 A/A=0.01351351	Pr(chiSq=3.175,df=1) =0.100	Genotype Freq.

Submitted individual genotype for ss105441728

There is no individual genotype data for ss105441728.

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