Submitted SNP(ss) Details: ss105441737

Submitted SNP(ss) Details: ss105441737

Submitter
Handle	SNP500CANCER
Submitter SNP ID	ERCC1-31
RefSNP(rs#)	rs1007616
Submitted Batch ID	SNP500CANCER_07_03_08_F
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	ERCC1-31

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	EPOCH
Ascertainment Samplesize	196
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 10
Genotype Summary	population count: 10
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GCAGGCGCAT CAGGAGGTCA GGAGATCGAG ACCATCCTGG CTAACGTGGT GAAACCCCAT
 CTCTACTAAA AAAAAATACA AAAARTTAGC TGGGCAGGGG CCTGTAGTCC CAGCTACTCA
 GGAGGCTGAG GCAGGAGAAT GGCGTGAACC CGGGAGGCGG AGCTTGCAGT GAGCCGAGAT
 TGCGCCACTG CACTCCAACC TGGGCGACAG AGCGAGACTC CATCTCAAAA AAAAAAAWAA
 TAATAATAAT AATAATAACT TAAAAAGATT GTAACTGGAT TGTTTGTAAC TCAATGGATA
 R
 ATGCTTSAGG GTATAGGGGA AAATAAAGAA CCAAAANCCC CACTCTAGAT TTACCCAGGA
 AACAGCTCCT TTAATGACTG GTTCCTCATT TTTTTCTCCC TCCCATCCAG GCCCGGAGGC
 TGTTTGATGT CCTGCACGAG CCCTTCTTGA AAGTACCCTG ATGACCCCAS CTGCCAAGGA
 AACCCCCAGT GTAATAATAA ATCGTCCTCC CAGGCCAGGC TCCTGCTGGC TGSGCTGGTG
 CAGTCTCTGG GGAGGGATTC TGGGGGTGTC ACCTTCTGGT GGCCCAGGTG GGCACCTTCA
 G

Submitted Frequency for ss105441737

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
P1 - MULTI-NATIONAL	204	A/G=0.44117600 G/G=0.35294101 A/A=0.16666700 N/N=0.03921600	SNP500CANCER_07_03_08_D	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	A/G=0.64516097 A/A=0.22580600 G/G=0.09677400 N/N=0.03225800	SNP500CANCER_07_03_08_D	SNP500CANCER
CAUC3 - MULTI-NATIONAL	132	A/A=0.36363599 A/G=0.28787899 G/G=0.25757599 N/N=0.09090900	SNP500CANCER_07_03_08_D	SNP500CANCER
PAC3 - MULTI-NATIONAL	178	G/G=0.47191000 A/G=0.33707899 A/A=0.16853900 N/N=0.02247200	SNP500CANCER_07_03_08_D	SNP500CANCER
P3 - MULTI-NATIONAL	560	G/G=0.46071401 A/G=0.32142901 A/A=0.17142899 N/N=0.04642900	SNP500CANCER_07_03_08_D	SNP500CANCER
HISP3 - MULTI-NATIONAL	98	G/G=0.85714298 A/G=0.12244900 N/N=0.02040800	SNP500CANCER_07_03_08_D	SNP500CANCER
AFR3 - MULTI-NATIONAL	152	A/G=0.46052599 G/G=0.36842099 A/A=0.11842100 N/N=0.05263200	SNP500CANCER_07_03_08_D	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	A/G=0.45833299 G/G=0.45833299 A/A=0.08333300	SNP500CANCER_07_03_08_D	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	G/G=0.66666698 A/G=0.20833300 A/A=0.12500000	SNP500CANCER_07_03_08_D	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	A/G=0.39130399 G/G=0.26087001 A/A=0.21739100 N/N=0.13043500	SNP500CANCER_07_03_08_D	SNP500CANCER

dbSNP summary of Genotypes for ss105441737

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	196	196	G=0.59693879	A=0.40306121	A/G=0.45918366 G/G=0.36734694 A/A=0.17346939	Pr(chiSq=0.205,df=1) =0.655	Genotype Freq.
CAUC1 - MULTI-NATIONAL	60	60	A=0.56666666	G=0.43333334	A/G=0.66666669 A/A=0.23333333 G/G=0.10000000	Pr(chiSq=3.833,df=1) =0.100	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.77083331	A=0.22916667	G/G=0.66666669 A/G=0.20833333 A/A=0.12500000	Pr(chiSq=4.041,df=1) =0.050	Genotype Freq.
HISP1 - MULTI-NATIONAL	40	40	G=0.52499998	A=0.47499999	A/G=0.44999999 G/G=0.30000001 A/A=0.25000000	Pr(chiSq=0.191,df=1) =0.752	Genotype Freq.
PAC1 - MULTI-NATIONAL	48	48	G=0.68750000	A=0.31250000	A/G=0.45833334 G/G=0.45833334 A/A=0.08333334	Pr(chiSq=0.107,df=1) =0.752	Genotype Freq.
P3 - MULTI-NATIONAL	534	534	G=0.65168542	A=0.34831461	G/G=0.48314607 A/G=0.33707866 A/A=0.17977528	Pr(chiSq=17.705,df=1) =0.001	Genotype Freq.
CAUC3 - MULTI-NATIONAL	120	120	A=0.55833334	G=0.44166666	A/A=0.40000001 A/G=0.31666666 G/G=0.28333333	Pr(chiSq=7.687,df=1) =0.010	Genotype Freq.
AFR3 - MULTI-NATIONAL	144	144	G=0.63194442	A=0.36805555	A/G=0.48611110 G/G=0.38888890 A/A=0.12500000	Pr(chiSq=0.146,df=1) =0.752	Genotype Freq.
HISP3 - MULTI-NATIONAL	96	96	G=0.93750000	A=0.06250000	G/G=0.87500000 A/G=0.12500000	Pr(chiSq=0.026,df=1) =1.000	Genotype Freq.
PAC3 - MULTI-NATIONAL	174	174	G=0.65517241	A=0.34482759	G/G=0.48275861 A/G=0.34482759 A/A=0.17241380	Pr(chiSq=4.880,df=1) =0.050	Genotype Freq.

Submitted individual genotype for ss105441737

There is no individual genotype data for ss105441737.

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