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Submitted SNP(ss) Details: ss105441745           
Submitter
HandleSNP500CANCER
Submitter SNP IDXRCC2-43
RefSNP(rs#)rs3218454
Submitted Batch IDSNP500CANCER_07_03_08_F
Submitted DateSep 05, 2008
Publication CitedN.D.
First entry to dbSNPSep 5 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodEPOCH
Ascertainment Samplesize204
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 5
Genotype Summarypopulation count: 9
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss105441745|allelePos=301|len=601|taxid=9606|alleles='A/T'|mol=Genomic
 AACTCCCGGG CTCAAGCGAG CCTCCTGCCT TGTCCTCCCG AGGGACTAGG ATTACAGGCG
 CGAGCCACTG TGCCCGGCCC AAAGACACTT TTATCAGGCA AGACATTCCA AGGGTTTAGA
 ATTACCTCTC AGGAGCCAAG GACAAAAACC AGACCTCCCT TTGGGCAAGG TTAAATTATT
 CACTACACAG TATGTTTCTC ATGTCATCAC AAAGAATATT TTTTAAAGTG TACTCAAGGG
 TCATGATTTA GTAAAAGCAG TCTTTTTTTT TTTNNTTTTT TTTTTTTTTA CTTCAAAGAC
 W
 TTCYTACGTA AAGCTGGTTT TGTTCTGCCT GAGTGCAGGT AGTGCTTGGC GATGTGTRCT
 AATACATTTC CACACCACTG CCTTGATTAC GCTMGCTGTC AGCAGGTACC CACTATTGCT
 TTTAGGACCT TAGTATCAAA CTAGGCAAAT AACATCTTAA TTTTTACTTT TTCTGTTTAC
 SAAAATAGTT TTGGCCATGG GTATGCCCTC AGAACCTCTG CTCTAATTAA GCACCYTGTA
 ACTTTACCTT GTATTATGAC ATAATCTCAT CTAGAGGACT GAGACTGCAC ATTCTTTGAG

  Submitted Frequency for ss105441745 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
AFR1
MULTI-NATIONAL
48A/A=0.95833302
A/T=0.04166700
SNP500CANCER_07_03_08_DSNP500CANCER
CAUC1
MULTI-NATIONAL
62A/A=0.77419400
A/T=0.22580600
SNP500CANCER_07_03_08_DSNP500CANCER
PAC1
MULTI-NATIONAL
48A/A=1.00000000
SNP500CANCER_07_03_08_DSNP500CANCER
P1
MULTI-NATIONAL
204A/A=0.87254900
A/T=0.12745100
SNP500CANCER_07_03_08_DSNP500CANCER
HISP1
MULTI-NATIONAL
46A/A=0.78260899
A/T=0.21739100
SNP500CANCER_07_03_08_DSNP500CANCER


  dbSNP summary of Genotypes for ss105441745 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
P1
MULTI-NATIONAL
204204A=0.93627453
T=0.06372549A/A=0.87254900
A/T=0.12745099
Pr(chiSq=0.058,df=1)
=1.000
Genotype
Freq.
CAUC1
MULTI-NATIONAL
6262A=0.88709676
T=0.11290322A/A=0.77419353
A/T=0.22580644
Pr(chiSq=0.107,df=1)
=0.752
Genotype
Freq.
AFR1
MULTI-NATIONAL
4848A=0.97916669
T=0.02083333A/A=0.95833331
A/T=0.04166667
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HISP1
MULTI-NATIONAL
4646A=0.89130437
T=0.10869565A/A=0.78260869
A/T=0.21739130
Pr(chiSq=0.070,df=1)
=1.000
Genotype
Freq.
HapMap-CEU120120A=0.92500001
T=0.07500000A/A=0.86666667
A/T=0.11666667
T/T=0.01666667
Pr(chiSq=1.520,df=1)
=0.251
Genotype
Freq.
HapMap-JPT9090A=0.98888886
T=0.01111111A/A=0.97777778
A/T=0.02222222
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss105441745 back to top
There is no individual genotype data for ss105441745.

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