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Submitted SNP(ss) Details: ss107938256           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_2_chr1_52066
RefSNP(rs#)rs28402963
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:84

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss107938256|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 AGGCATGCAC CACCATGCCC AGCTAATTTT TGTTATTTTT AGTAGAGATG GAGTTTCCCC
 ATGTTGGACA GGATGGTCTC GATCTCTTGA CCTCGTGATC CACCCTCCTC GGCCTCCCAA
 AGTGCTGGGA TAACAGGCGT GAACAACCAT GCCCGGCCTG TAAAACTTTT TCCTAATTTA
 ACAGAAAAAT AATAGTATTA
 Y
 ATTTTATCAT ATTTCTTTGA TTTCTAAGAC ACACATACAC ACACACACAC ACATATCTGT
 ATATACAAAT ACACGTATAG CTTACATTTT AATTCTTCAT TTCATTTGTT CATTTATTAG
 GTCTTGGAGA TTTTGTGAAA CTGTTTAAAT TCTTTTTTAT ACTATGAAGA TATCAACCTT
 TTGTCTCTAC AGCATTTCAA

  Submitted Frequency for ss107938256 back to top
There is no frequency submission for ss107938256.


  dbSNP summary of Genotypes for ss107938256 back to top
No sufficient data to compute Hardy-weinberg probability for ss107938256.


  Submitted individual genotype for ss107938256 back to top
There is no individual genotype data for ss107938256.