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Submitted SNP(ss) Details: ss107938259           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_5_chr1_695745
RefSNP(rs#)rs72631875
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:124

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss107938259|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 ATATTCTTTT TTTTTTTTTT GAGGCCAGTT TCACTCTGTC TCCCAGACTG GAGTGCAGGG
 GCACAGTCTC GGCTCACTTC GACCTCTGCC TCCCCAGTTC AAGTGATTCT CCTGCCTCAG
 TCTCCTGAGT AGCTGGGATG ACAGGAGTGG AGCATGCCTA GCTAATCTTT GTATTTCTAG
 TAGAGATGCG GTTTTGCCAC
 R
 TTGCCAGTCC ACCTGTCTCA GCCCCGCAAA GTGCTGGTAT TACAGGAGTG AGCCACTGCA
 CCCAGCATTT GCCAAGACCT TTGATGGCAG GCTTTTTCCA GGTGATCAGT CCTTGTCTGG
 TCTGGCTCTG CCCCACTCTC CTTCTCACCT AGTTGGAATC CCTAGCTACT TTTCAGTAGA
 GGAGAGTGTG TACCCCAATC

  Submitted Frequency for ss107938259 back to top
There is no frequency submission for ss107938259.


  dbSNP summary of Genotypes for ss107938259 back to top
No sufficient data to compute Hardy-weinberg probability for ss107938259.


  Submitted individual genotype for ss107938259 back to top
There is no individual genotype data for ss107938259.