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Submitted SNP(ss) Details: ss107938282           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_28_chr1_769890
RefSNP(rs#)rs2977613
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:79

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss107938282|allelePos=201|len=401|taxid=9606|alleles='G/T'|mol=Genomic
 CAGGCCTGCT GTGTGTGATG ATTGCTAACC AGGTTATGAC AGTGATCTTT AAGTAAGTGG
 GAATCTTGTG AGTTTTGAGG TTTTGTTTTT TTTTTTAATG AAATCTACAT GGGATGTTTC
 AAAAATAGCA GCCTCTGTAT ACATTTGTCA AGCAGGAAGC TGGGTCTGCG GGGAGTAGGG
 TGGGGCTGGT TCTCCCACAC
 K
 CTTGCCACTT TCAGGCCCTT GCCTTGCATG GGCTGCGGTG GTTCTGCCAG TGTGGATTCG
 AACCGATAGG TTTCGCTGTA CCTTGATCAG CATCCTGCTG CCGAGAAAGC CAAAAAGGGC
 TGGAGCAACC CTCCCGTGTG CCATGTGAGC CTGTTTCCTT TCTACAGTCA CCAGTTCACG
 CAGCAAGTGT CAGAGCATTC

  Submitted Frequency for ss107938282 back to top
There is no frequency submission for ss107938282.


  dbSNP summary of Genotypes for ss107938282 back to top
No sufficient data to compute Hardy-weinberg probability for ss107938282.


  Submitted individual genotype for ss107938282 back to top
There is no individual genotype data for ss107938282.