NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss107938283           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_29_chr1_770648
RefSNP(rs#)rs2977612
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:96

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss107938283|allelePos=201|len=401|taxid=9606|alleles='T/A'|mol=Genomic
 AGGTCCATGG GGGCCCTGCT GCTTTTTCCC CTTAGCCCTG GGCGAGGTCA TCATAGAGGG
 GGAGTGGCAA TGGCTCACAA GGTACTAGTG GAACCCCAGT AAGTTATCTC AGAGCCCGCT
 TAGAACACAA GTGCTACGTC CCCCAAAAGC TTTGCAATGA GTATCTGATG GGAACAAACT
 CAGTCAAGGA CAGGCCCAGG
 W
 TGGGGCTTGC AGGCTGCAGA TTCAGAATTG TTTATGAGAT GGGAGCCATA CTTTCTAACA
 ACAAGACCTG AATTTCTCAA TTTAATCCAA GTCGTGACTT AAGTTAGCGC CCTTCCGTTC
 CTCTATTACA TTTCTGTTCG GCATGGATCA AATTGCCTAC AAGGTGGAAC AGATTTCAAC
 TGCAATCTCT GAACCAGAAA

  Submitted Frequency for ss107938283 back to top
There is no frequency submission for ss107938283.


  dbSNP summary of Genotypes for ss107938283 back to top
No sufficient data to compute Hardy-weinberg probability for ss107938283.


  Submitted individual genotype for ss107938283 back to top
There is no individual genotype data for ss107938283.