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Submitted SNP(ss) Details: ss107938320           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_66_chr1_833268
RefSNP(rs#)rs11516185
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:112

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss107938320|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 TCACCTCCCT CCTGCCCGGT CCTTCTGACC AGCCGAGAGA GTACAGACCC TCCCCGATCT
 GGGAGGAGGG CCCATCACTG GCTCCCTGCC CCCTGCTCGC CAAGCCCCCC GGGACTTCCC
 AGGCTGTTCC TTCCACCTGA AGGGTCTCCC TCTGGCCAAG GCGAGGCTCA CAGTTCCCCT
 GTCAGGATGG GGCCTTAGAC
 R
 CCCAGACTGA CCCAGTGACA ATCACCTTAA TTCTCCACAG ATAACTACCT ACAAGTTTTC
 TGATTTATTC ATTAGTGGAT TTGTTCGTGA TCAGCCCCAC ACCTGTTAGA ATGGAAGCTG
 CAGGCAGCAG GAACCAGTGT GGCCAAGTCG GAGGGCAGCA CAAGCCGGTC CTCCTCGTGG
 ACAGCAGGTG TGGAGCAGGC

  Submitted Frequency for ss107938320 back to top
There is no frequency submission for ss107938320.


  dbSNP summary of Genotypes for ss107938320 back to top
No sufficient data to compute Hardy-weinberg probability for ss107938320.


  Submitted individual genotype for ss107938320 back to top
There is no individual genotype data for ss107938320.