NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss109937387           
Submitter
Handle1000GENOMES
Submitter SNP IDNA19240_2008_12_16_300001_chr2_20994690
RefSNP(rs#)rs28545158
Submitted Batch IDpilot_2_YRI_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 16 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:112

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss109937387|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 CAAACCTAGC CTGGGCAGAT CTGGCTGAAA TTCAGAGTAA ATTCCCCACC TTATCTCCTC
 TCTCCCCATC CCTCCTCTTT CCTCATCTCA TAGTTAGATC CTACATATGC ATGGCTAAGA
 GTTGCTCACA GAGGGTGAGG ATTCGGTTTT TAGAAATCTG GACAGAAGCC TCAGGGCCAG
 AAGCACAAGC AGAGAAAATC
 R
 TCTCTGGGCT TGGACTTGGA GACATTCTCC TGCCCAGCAA CTGGAGACAG AGTTTGCACA
 TTGAGGTGGA GGTGTCCCAG GCAGGCAGCT GTGGGGATAG TCATTGTGAG CTCTGGTTGT
 GAAGTCAAGT GCCTTGAGAC CATGTGCTGA TTCTGCAGTT CCCTTCCTGA TGACCTCAGG
 CAAGTCACAC AGTCAGAGAA

  Submitted Frequency for ss109937387 back to top
There is no frequency submission for ss109937387.


  dbSNP summary of Genotypes for ss109937387 back to top
No sufficient data to compute Hardy-weinberg probability for ss109937387.


  Submitted individual genotype for ss109937387 back to top
There is no individual genotype data for ss109937387.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement