| Submitter | | Handle | SC_SNP | | Submitter SNP ID | chr1.NT_077930.1_46023 | | RefSNP(rs#) | rs4975471 | | Submitted Batch ID | CHR20_NA10470_200306 | | Submitted Date | Jul 03, 2003 | | Publication Cited | [1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases | | First entry to dbSNP | Jul 3 2003 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_077930
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | CHR20_NA10470_200306 | | Ascertainment Samplesize | 2 | | Population | N.D. |
| | Allele | | Observed Allele | T/A | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | Unknown |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | N.D. | | Genotype Submission | N.D. | | Haplotype | N.D. |
|
| Comment | | sequence:20SNP45079-236g10.q1cposition:-159quality:51 |
>gnl|dbSNP|ss11100108|allelePos=353|len=2679|taxid=9606|alleles='T/A'|mol=Genomic CCTGCTTTAA AGGAGACTCT TTTCTGCTGC ATAAGTTATG TTTCCTGTTG TCTCTTTTTA
AAACTTATTT TCCTAACAAT TACCCAGAGT CTTGTGGCTT GAAAGAAAAA CATTTATTTT
GTTCATGAAC CTGTGGTTTG GGAAAAACTT GGCCAGGACA GCTTGCTCTG CTCCCTTCAG
CTTCCctagg aacagctgat cagttgggga aatggaatcc tctgaagctt tggtcaccca
cttgtttgat ggttgatgct ggccatcggc tgtaaacttg gttgggacag gcagcatgaa
cactgacaca ggcactttca ggctctgttt gtggcctgat ggctctcaca at
W
ggggctgggt tccaagggaa aacagtctga gatagggaag ccacatggta tccctttcac
tacattctac tcattagaag gaagtcagta aggctggccc atattcTGTT TTTTAAATGG
GATGAATGTA GCTTCTCTTT TGttttaatt gacacatata tacataatta tgggctatag
agtgatattt ttatacacgt atatagtgtg taatgatcaa gctaactagc acatttacta
cttcaaccat ttttcatttc tttgaattgt gaacattcaa aattttctgg ctttttaaaa
atatacaata agtcatagtt aaccatattc accctacaat gccacagaac accagaactc
actcctctta tctaactgta attctgtatc cattaaccag cctcctctcc cctacttctg
tgagcttttt tttgttaaga gacagggtct tgctagtgta gtctgggctc tgggcaactg
tagtcaccca gactggagac agtggtttga tcatagttca ctgcagcttc aaactcttgg
gcccatctga tcctcacacc tcagcctcct gagcagctgg cattatgggc atacaccatt
gcacatgtct gatttttgac tttgtagaga tatctcccta tgttgcccag ggagctctgg
aacttttggc ctcaaatgat tctcttgctt tggtcttaca aagagcgagg aagttacagg
catcagccat attgcccagc cttcaatttt cctttagctc ccacacatga gtaagaatgt
gcagtattta tctttctgtg tctgcactta acataacatc cgtcagactg atccacgtgg
ccacgaataa caggatttaa ttcctttata tggtgaatag tattccactg tgtttgtgtg
ccacagtttt tcgtccattc atttggtgat ggacatgtag gttgattcca tacacaagct
gttgtggata gtgctacagt aaacatatga ggacagatat ccttttgatc tattgttttc
ttttctattg cctgaatacc cggtagtggg gttgctggat ccctcggcag tcccattatt
agtttttttg agaaaacctc ctgttgttct ctatagtggc tgcactaatt taccttccca
ccaacagcat gtaagagttt actgttctct ggagcctcac cagcatttgc tatttttttt
gtcttttcaa tgacagcaat ttattcaaat tgaagcaaga ttatatcaca ttgtagattt
gatttgtatt tccctgagga ttagtgatac tgagcatttt aaaatttatt tatcggctat
ttgtatttct ttttctaaaa aaaagtatag ttagatattt tgcccaattt taaactcaga
ttttttttac tgtgaagttg tttgagtttt tttgtatatt ttgtatatta gtccctcatt
aggtgaatag cttgacaata ttttctccta ttctacaggt tttctcttca ctcagttgtt
tgctggacag aagctcttta gcttaatgta gtgtcttttg tctatgattt gttgtttgcc
tatgcttctg atgtcttacc cataaaaatc tttgtgcaga ctaatgtcct caagcatttt
ccttatattt acttagagta gtttgataat tttgggcctt acatttcagt cttcaatcga
ttctgagttt atgttgttat atggtgttac ataggaagct aatatcattc ttctccatat
ggatatttag ttttcccagt gtcattcatt tgaagaggct gtcctttccc cagcgtatgt
tcttggaatg ttcgtccaaa atcagttggc tggaaatatg tgaatttatt tctgggtgct
gtattctatG GTCTTTACCC CAAGAATCAT TACTTCTTAA AATGCAATTC AAATTAGCAT
GAAACATTTG CAGTTTAAGG AAAGGCTTAT AGCATCAGAA TCCTTAATCA TAGATTTCAT
TAttttgtgt tgttttttga tatagggtct ttgtctgtta tccaggcaga agtgcagtga
taataattca ctgcagccct gaactctggg tacaagccat ccttttgcct cagtatccca
actagctggg tctacaggca tgaaccacca tgcccgggta attaaaaaaa attttttttt
gtagagatgg gggtctcact atgttgctct ggctgatctt aaattcctgg cctcaagtga
tctttctgcc acagcttttt aaagtgctag gattacaggc atgagccacc atgccTAATA
TAGAGTGTAA TATCACTTTC AAAGTCTTAT TCCTAGACCC ATTTAT
There is no frequency submission for ss11100108.
No sufficient data to compute Hardy-weinberg probability for ss11100108.
There is no individual genotype data for ss11100108.
| 
