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Submitted SNP(ss) Details: ss11100110           
Submitter
HandleSC_SNP
Submitter SNP IDchr1.NT_077991.1_28014
RefSNP(rs#)rs2646713
Submitted Batch IDCHR20_NA10470_200306
Submitted DateJul 03, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 3 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA10470_200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45079-1768h08.p1cposition:63quality:32

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss11100110|allelePos=4953|len=6128|taxid=9606|alleles='T/C'|mol=Genomic
 TACCCACAGA GATATTTTAG CATTTTTCAA TAGAGAAGTT TCAAGTATTT TTACAGTATT
 AAAGACAGAT AAAGAGCAAA ATGGGGGttt aaattttatt ttaattcaaa atttacttta
 attattttta GTGTGTTATT GTGGCTCCCT GTAGAAGTGT AGAGTCATTT TAGTTCAAAT
 ACTTTAATGA TCATCTGCAA GGGTACTCTT TAAGTACTTA CTGAACGTAT TGTGGTAcac
 atccttactt tctgacactg aaagatggcc caaacttatc ttgtatactt cttgaaccca
 tccgagaatt gtatttagtg aactctggtt cttttaattg gagaatggaa actaagatcc
 agatccttgt tgggttacca cggtgtcatt atttctagac cctctcaaaa ggtcctctag
 gcccagacaa aacaaggcat agatacatac acaaatacag gtgtgtatac tagtatgtgt
 acatacgcat ttctgtaaat attttctttt gttaccaatt tttctatatc agagtaagca
 caaattcata ctagtgtctc tgactctaat ccactattat gtgaattgtt ctgcccatct
 tctcttgctt acctgtaact tccaactcac acagtgagaa atctgacttc tatcatttgc
 catccatttg cctaattgtt caattccagt atacatataa gagtattcaa actttttatc
 caacccctgt ggtaaactat tttatcaacc agaatataat agctatgtac agttctttgc
 ctttagtatc acaaactcta ttggagttac tattccctca accttcttta gtaaggttgt
 ttcatacttt tttttttttt cctttgagat gaagtctcac tgttgcgcag gctggagtgc
 aatggtgtga tctcggctca ctgcaacctc cgcctcccgg gttcaaggaa ttctgctgcc
 tcagcctccc aagttgctga gattatagtc gcctgccacc atgcccacct aatgtttgta
 tttttagtag agatggggtt tagccatgtt ggctaggctg gtctcaaact ccagacttca
 ggtgatctgc tcacctcggc cttccaaact gctgggatta cagacttgag ccacggcgcc
 cagccagttt catacatttt gaacacagtc acattgtttt gtcacattcc tcattccaca
 attgaatcat tacacctcct acatgatatt ttaaaaattt gcattcatta aggttcatat
 ttttgtgcca tataattcaa tggattttga caaatgcaat gtcatgcatc ctgctatagt
 atagatgttt gcttccctga acctcatgtt gaaatttgat ctatggtgtt gaaggtgagg
 cctaatggaa ggtgtctggg tcattggggc agagtcttta tgaataaatt aatcccctcc
 ctgtggtgat gggggggcct gagtgagtgc ttggactgtt agtttctatg agagccgatg
 gttaaaaata gtctgcccct actccccctt acatgcttcc tctgtcaccg tgtactctgc
 acatacaggc tcccctttgt tttctgccat gaatgaaagc agcctgaggc ttttaccaga
 ggcccagtgt tcaaaccagc agcacagtga gccaaataaa tctttttttc tttataaatt
 aagtctaagg ttaaccttta aataggaaaa aaaaaattcc ttgtgcttca cctatcccac
 actgtctgcc caacccaaac ccctggcaac cgctgatcat tttatactca ctactgtgtt
 tttccagaat tttgtattac tggtataata cagtatgtaa tctttcagac tgcttccttg
 tactcagcaa tatgcgttca acaacattca tgttgtttcc ttgtttggta actcaacctt
 tttaatgtat aataacattt aagtgtatgg ttgtactgta tttattaatt tgtttatagg
 aggatatctt ggttgactcc agctttcagt aacatgagta aaatttctat aaacatttga
 atttttgtgc tgaccttgtg tccggaattg gtgggttctt ggtcttgctc acttcaagaa
 tgaagccacg gacccttgcg gtgagtgtta cggttcttaa agatggtgtg tctggagttt
 ctcgcttctg gtgggttcgt ggtctcgctg acttcgcgag cgaagctgca gaccttcgca
 gtgagtgtta cagctcttaa agatggcgtt cattctttcc ggtgagttca tgttctctct
 ggcctcagga ataaagctgc agaccttccc agtgaatgtt acagctcata aaagttgtgc
 gtccggaatt gttccttcct cctatccaga gttgttcgtc tttcacggag ggttcatggt
 cttgctggcc cgagtagctg tcctttgcag agagttcgtg attttgctgg cttcaggagt
 gaagctacag acctttgccc tgagtgttac agctcacaaa agaaacacac acccagagtg
 aagagcagca agatttactg caaagtgcaa atgaacaatg cttccacaac acagaagggg
 accccagcag gttatcgctg tcggcttggg caccctgctt ttatcccttt atctgaccac
 cccccccact cacatcctgc tgattggtcc attttccaca gagctgattg gtccatttta
 cagagagctg attggcccgt tttttacaga gagctgattg gtccattttg acagggtgct
 gattggtgca tttacaaacc tttagctaga cacagagtgc tgattggtgc gtttgcaatc
 ctttagctag acacaaaagt tctccaagtc cccactagat tagctagaca cagagtgctg
 attggtgtgt ttacaatcct ttagctagac acaaaagttc tccaagtccc cacccatccc
 agaagcccag ccggcttcac ctctcactga cactccctgc ccgactttgg ggcacctagc
 ccaggcactc tggcagctca gagggagctc atccccccat caagcccagg caggcgacag
 ctggcactgc tgagtgtggg actggtggag cccgcaccca tccagaaccc ccactcccac
 ccgtgcctct ccctccatac cacccctcga gcagagggag ccgactccag ccttggccaa
 ccccagagag gggcccccac agtgcagccc acacagaggc agaggaggaa ccaagagcga
 gcaagggctg ctagcatgtt gtcatctctc aacatcagct ttcaaaattg ttaagtcaat
 acgccaggag catgattgct ggataatatg gtagataacg tttagctttt caggaaactg
 taaagctgtt tccaaagtgg ctgtacaatt ttgcaaccca ccagcaatga ataagtgttg
 ctatagctcc acattctcag taatatttag tattgacagt tttttttcat gtttactatt
 ctaacaggtg tgtagggttt caccttgtta ttttgatttt caatgctcta attacaagca
 aactaaagca tcttttctta tgcctatttt ccatctttat attttttagt aaaaggtcaa
 ttcgtgtatt tgtgaattta aaaaatttat tgtttttctt tttattgttg aattttaagt
 tatttttata tgttgaatcc acatttttca tcagatatgt gttttgcaaa tatattctcc
 caatctgtgg tatatctatt tattctctta acagtatttc atggagaagt tttcaatctt
 aataaagtac aacttatcaa ttttttatgt catgctttga atgtaatctt aagatccatt
 gccaaactca agatctcata gcttttctcc tatcttttct tctaTAATTt ttttttatta
 ttattatact ttaagtttta gggtacatgt gcacattgtg caggttagtt acatacgtat
 acatgtgcca tgcaggtgtg ctgcacccac taactcgtca tctagcatta ggtatatctc
 ccaatgctat ccctccccca ctacccccac cccacaacag tccccatagt gtgatgttcc
 ccttcctgtg tccatgtgat ctcattgttc aattcccacc tatgagtgag aatatgcggt
 gtttggtttt ttgttcttgc gatagtttac tgagaatgat gatccttcca atAtttaaaa
 cgtcattcca ctacgttttt gcttgtatgg tttatcatga gaagtgtgct gtaattctta
 tatagctaag gtgtttccta ctcaactcct tccacagtct ctttcgggat attttctttg
 tgttagtttg tctgcagttt gaatataata tgcccaggtg ttttggtctt gtcttatttt
 gttttcatat ttgtttcctt attttttata tctgttatgt gtttttaatt gggaaaaatt
 cacagctatt attaactgaa tagttctgca gctctgttct gtcttctatt ttttttagat
 atcactaata ttaatgtgtg atacctttgg aaattgtccc aaagtttgtg catattttat
 ttaaagatgt ttcctccaca tttcagtttt ggaatattct attgatctat ctttaaactc
 aatgttgctt tttcttctgc tgtgtccagt cttctgatga cactgtcaat gctaggcttc
 atatatgtta tagtattttt gagatattct ttagttctgt tacaattgtt ttatttctag
 cttttccttt agaatcttcc tttgagtttc tattactctg ctaatgtaat ctattttcct
 tacatgttat ctattttttc attagagcca tgaaaatatt aataataatt attttaaatt
 ctctgtctaa taatttcaat atctgtgtca tatctgagtc tggtattgat tgcttagtta
 cttcagattg tatttttctt ggcttttagc at
 Y
 gcttatgatt tttgttgaaa atcagaaata ttgtattgag taataacatc tgtggtaagt
 acacctttag tgtgagggtt tatgtaaatc tgaataggag ttgtgctgtg tttaatattt
 tctataactg tagttaccag aggtttaact tttttctaat gtccttgttt ttgtcttcac
 ttttgacttt ctacttccct atgtactctc ctcagaaaaa atttgcctct tttcccgctt
 tcagatgcaa tctactgtaa ttacactaaa gtacctgttg gtttgatgtt aatatgtgaa
 gatgaggaag cagtctaaat cttatgatta aatctcagtc ttttagtaat cctatgtctc
 tgaactgtga cattcacaac tgtctcccca gtgctgtaaa tttttttccc tcctatgtaa
 gaaagaaatg ttaagaggtg ctagagtgtg aagaaatgtc ttcctgcaac taaagacata
 ttctgataaa gtatttccct ctggagagta ggtcatttta atagataatg ttctgaacat
 atttcacaat gcttaatttc cagtctccct gacagtctgt cagtggatat ttcttagctt
 tacaatatga gaactggtgg gattccaaga ggtaaccaca aaaacatgtg ttagcaccca
 tatactagag cccttggagt ttcttactct ttttccagtc tacatttaag ctctagcaat
 ttattataat gaacatttta gtattcctac caatctgtgg ctccagtaac ttctgctcca
 gggtatcaaa tcatggctga gaccctctgg acttcttatc tccatatttt cagggtggtg
 gtttgcactg caaattcagt ttactgatag tcccaaaaaa atcactgatg tttagtttac
 tcattggttt attttttcta agaacaggag agattttcaa ggtttcatat gtcaCATTTG
 AAAAAGGTGG GTTTTTTGat atattatttt attttttatG TGTTTTATTC TGGAATTCTA
 CATGTATTTC AGTCTCTGGT CTATAATTCT CTACTCTGAT TTGTCTAATT TGCCATTAAA
 GTATACCTTT TATCTTAATT TTATCTTTTG TTTCCCAGTT GTAATATTTC TATTTGATTC
 CTTGTTATGT TTTTATTTTT TTGCTAAAAT ATTTC

  Submitted Frequency for ss11100110 back to top
There is no frequency submission for ss11100110.


  dbSNP summary of Genotypes for ss11100110 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.95833331
T=0.04166667C/C=0.93333334
C/T=0.05000000
T/T=0.01666667
Pr(chiSq=8.389,df=1)
=0.005
Genotype
Freq.
HapMap-HCB
EAST ASIA
8888C=0.97727275
T=0.02272727C/C=0.95454544
C/T=0.04545455
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090C=0.98888886
T=0.01111111C/C=0.97777778
C/T=0.02222222
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120C=0.75833333
T=0.24166666C/C=0.53333336
C/T=0.44999999
T/T=0.01666667
Pr(chiSq=3.112,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss11100110 back to top
There is no individual genotype data for ss11100110.

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