Submitter | Handle | SC_SNP | Submitter SNP ID | chr1.NT_077930.1_183812 | RefSNP(rs#) | rs6422542 | Submitted Batch ID | CHR20_NA17119_200306 | Submitted Date | Jul 03, 2003 | Publication Cited | [1] A linkage disequilibrium map of human chromosome 20 [2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP [3] SSAHA: A Fast Search Method for Large DNA Databases | First entry to dbSNP | Jul 3 2003 12:00:00:000AM |
| Resource Links | GenBank Accession | NT_077930
| Submitted Gene Name | N.D | Submitted Gene ID | N.D. | Submitted SNP Synonyms | N.D | Submitted linkout | N.D |
| Assay | Species | Homo sapiens | Molecular Type | Genomic | Method | CHR20_NA17119_200306 | Ascertainment Samplesize | 2 | Population | N.D. |
| Allele | Observed Allele | T/A | Ancestral Allele | N.D. | Allele Origin | N/A | SNP Class | SNV | CpG Code | Unknown |
| | Variation | Frequency Submission | N.D. | Genotype Summary | N.D. | Genotype Submission | N.D. | Haplotype | N.D. |
|
Comment | sequence:20SNP45080-585d09.p1cposition:150quality:43 |
>gnl|dbSNP|ss11118891|allelePos=6177|len=6537|taxid=9606|alleles='T/A'|mol=Genomic TTACCTAAAA ATATTATTTT ATGTAAAATT GTTTTAAAGG TCAGTTTGCA CGTTTGAAAA
GCATCTTGTA CAATGTTACA TAATATATTG CATATTTGGT TACATTGTTT TAACTGTGTA
AATATGGTTT AAATCTGTAA TGCTCTTTAG TGCTGATCAT GATGCAAATC AAATTTATCT
GTATAAAAGG CTCCTGTTAA ttttttttta ttatacttta agttttaggg tacatgtgca
caaagtgtag gtttgctaca tatgtacaca tgtgccatgt tggtgtgctg cacccattaa
ctcctcattt aacattaggt atatctccta atgctatccc taccccctcc acccacccca
caacagtccc cagtgtgtga tgttcccctt cctgtatcca tgtttcctca ttgttcaatt
cccacctatg agtgagaaca tgtggtgttt ggttttttcc cttgcaatag tttgctgaga
atgatggttt ccagcttcat ccatgtccct acaaaggaca tgaactcatc attttttatg
gctgcatggt attccatggt gtatatgtgc cacattttct taatccagtc tatcattgtt
ggacatttgg gttggttcca agtctttgct attgtgaata gtgccacaat aaacatacgt
gtgtatgtgt cttttgagca gcatgatttg taatcctttg ggtatatacc cagtaatggg
atggctgggt caaatggtat ttctagttct agatccctga ggaatcacca cactgacttc
cacagtggtt gaactagttt acagtcccat caacagtata aaagtgttcc tatttctcca
catcttctcc agcacctgtt gtttcctgac tttttaatga tcgccattct aactggtgtg
agatggtatc tcattgtggt tttgatttgc atttctctga tggccagtga tgatgagctt
tttttcatgt gtcttttggc tgcataaatg tcttcttttg agaagtgtct gttcatttcc
tttgcccaca ttttgatggg gttgtttgtt ttcttcttgt gaatttgttt gagttcattg
tagattctgg atattagcca tttgtcagat gagtaggttg caaaactttt ctcccattct
gtaggatgtc tattcactct gatgatagtt tcttttgctg tgcagaagct ccttagttta
attagatccc atttgtcaat tttgtctttt gttgccattg cttttggtgt tttagacatg
aagtccctgc ccatgcctat gtcctgaatg gtattgccta ggttttcttc tagggttttt
atggttttag gtctaacatg taagtcttta atccatcttg aattaatttt tgtataaggt
gtaaggaagg gatccagttt cagctttcta catatggcta gccagttttc ccagcaccat
ttattaaata gggaatcctt tccctatttc ttgtttttgt caggtttttc aaagatcaga
tagttgtaga tatgtggcat tatttctgag ggctctgtcc tgttccattg gtctatatct
ctgttttggt actagtacca tgctgttttg gttactgtag ccttgtagta tagtttgaag
tcaggtagca tgatgcctcc agctttgttc ttttgcctta gaattgattt ggcaatgcag
gctctttttt ggttccatat gaactttaaa gtagtttttt tccaattctg tgaagaaagt
ctttggtagt ttgatggaga tggcattgaa tctttaaatt accttgggca gtatggccat
tttcaagata ttgattcttc ctacccatga gcatggaatg ttcttccatt tgtttgtatc
cttttttatt tcattgagca gtgatttgca gttctccttg aagaggtcct tcacatccct
tgtaagtggt attcctaggt attttattct ctttgaagca attgtgaatg ggagttcact
catgatttgg ctctctgttt gtctgttatt ggtgtataag aatgcttgtg atttttgcac
attgattttg tatcctgaga ctttgctgaa gttgtttatc agcttaacga gattttgggc
tgagatgatg gggttttcca cattcacaat catgtcatct gcaaacaggg acaatttgac
tgcctctttt cctaattgaa tgccctttat ttccttttcc ttcctgattg ccctggccag
aacttccaac actatgttga ataggagtgg tgagagaggg catccctgtt ttgtgccagt
tttcaaaggg aatgcttcca gtttttgcca ttcagtatga tattggctgt gggtttgtca
tagatagctc ttattatttt gagatacgtt ctatcaatcc ctaatttatt gacagttttt
agcatgaaga tttgctgaat tttgtcaaag gacttttctg cgtctattga gataatcatg
tggtttttgt ctttggtcct gtttatatgc tggattacgt ttactgattt tcatatgttg
aaccagcctt tcatcccagg gatgaaaccc gcttgatcat ggtggataag ctttttgatg
tgttgtagga ttctgtttgc cagtatttta ttgaggattt ttgcatcact gttcatcaag
gatattggtc taaaattctc tttttttgtt ttgtctctgc caggctttgg tatcaggatg
atactggcct cataaaatga gttagggagg attccctctt tttctattga ttggaatagt
ttcagaagga atggtaccag ctcctccttg tgccactggt agaatttggc tgtgaatcca
tctggtcctg gacttttttt ggttggtaag ctattaatta ttgcctcaat ttcagagcct
gttattggtc tattcagaga ttcagcttct tcctggttta gtcttgggag agtatacgtg
tcgaggaatt tatccatttc ttctatattt tctagtttat ttgtgtagag gtgtttatag
tattctctga tggtagtgtg tatttctgtg ggatcggtgg tgatatcccc tttgtcaatt
tttattgcat ctatttgatt cttctttctt ttcttcttta ttagtcttgc tggtggtcta
tcaattttgt tgatcttttc aaaaaaccag ctcctggatt cattgatttt ttgagggttt
tttgtgtctc tatttccttc agttctgctc tgatctaagt tacttcttgc cttctgttat
cttttgaatg tgtttgttct tgcttctcta gttcttttaa ttgtgatgtt aggatgtcaa
ttttagttct ttcatgcttt ctcttgtggg catttagtgc tataaatttc cctccacaca
ctgctttgaa tgtgtcccag agatactggt atgttgtgtc tttgttcttg ttggtttcaa
ataaaatctt tatttctgcc ttcatttcgt tatgtaccca gtagtcattc aggagcaggt
tgttcagttt ccatgtagtt gagtggtctt gagtgagttt ttaaatcctg agttgtagtt
tgattgcact gtgttccgag agacagtttg ttatactttc tgttctttta catttgctaa
ggagtgcttt acttccaatt atgtgctcaa ttttggaata ggtgtggtgt ggtgctgaaa
agaatacata ttctgttgat ttggggtaca gagttctgta gatgtctatt aggtctgctt
agggcagagc tgagttcaat tcctgtatat ccttgttaac tttctgtctc gttgatctgt
ctaatgttga cagtggggtg ttaaagtctc ccattattat tgtgtggaag tctaaatcac
tttgtaggtc actaaggact tgctttatga atctgggtgc ttctgtattg tgtgcatata
tatttagaat agttagttct tgttgaattg atccctttac cattatgtaa tggccttctt
tgtctctttt gatctttgtt ggattaaagt ctgttttatc cgagactagg attgcaaccc
ctgccttttt ttgttttcca tttgcttggt agatcttcct ccatcccttt attttgagcc
tatgtgtgtc tctgcacgtg agatgggttt cctggataca gcacactgat gggtcttgac
tctttatcca atttgcctgt ctgcaccttt taattggagc atttaaccca tttacattta
aggttagtat tgttatgtgt gaatttgatc ctgtcattat gacgttagct ggttattttc
ctcgttagtt tatgcagttt cttcctagcc ttgatggtct ttacaatttg gcatggtttt
acagtggctg gtaccagttg ttcctttcca tgtttagtgc ttccttcagg agatctttta
gggcaggcct ggtggtgaca aaatctctca gcatttgctt gtctgtggag catattattt
ctccctcact tatgaaggtt agtttggctg gatatgaaat tctgggttga aaattctttc
ctttaagaat gttgaatatt ggcccctact ctcttctggc ttatagagtt tctgcagaga
gatcagcagt tagtctgatg ggcttccttt tgtgggtaac ccgacctttc tctctggctg
cctttaaaat tttttctttc atttcaactt tggtgaatct ggcaattatg tgtcttggaa
ttgctcttct cgaggagtat ctttgtggca ttctctgtat ttcctgaatg tgaatgttgg
cctgccttgc tagattgggg aagttctcct ggataatatc ctgcagagtg ttttccaact
tggttccatt ctccccgtca ctttcaggta aaccaaatag acgtagattt gttctattga
catagtccca tatttcttgg aggctttgtt catttctttt tattcttttt tctctaaact
tctcttcatg cttcatttca ttcatttcat cttccatcgc tgataccctt tcttcccgtt
gatcacatcg gttactgagg cttatgcatt tgtcgtgtag ttctcgtgcc atggttttca
gctccatcag gtcctttaag gacttctcca cattggttat tctagttatc cattcgtcta
attttttttt tcaaagtttt taacttcttt gccattggtt cgaacttcct cctttagctc
ggagtacttt gatcttctga agtcttcctc tctcaactct tcaaagtcat tctccgtcca
gctttgttcc attgctggtg aggagttgca ttcctttgga ggaggatagg cactctgatt
tttagagttt ccagtttttc tgctcttttt ttccccatct ttgtggtttt atctaccttt
ggtccttgat gatggtgaca tacagatggg gttttggtgt ggatgtcctt tctgtttgtt
agttttcctt ctaacagtca gggccctcag ctgcaggtct gttggagttt actggaggtc
tcctccagac actatttgcc tggggggtat cagcagtggt ggctgcagaa cagtggatat
tggtgaagtg caaatgctgc tgcctgatcg ttcctctgga ggttttgtct cagaggggta
cctggccatg tgaggtgtca gtctgcgcct actggggggt gcctcccagt taggctattg
gggttcaggg acccactagg tgggggttgt ctgcccgttc tcagatctca agctgcatgc
tgggagaacc actactctct tcaaagctgt cagacaggga catttaagtc tgcagaggtt
attgctgtct tttgttggtc tgtgccctgc ccaccgaggt ggagcctaca gaggcaggct
ggcctccttg agctgtggtg ggctccaccc agttcgaact tcctggctgc tttgtttact
tactcaagcc cgagcaatgg cgggcgcccc cctcccccag ccccactgtt accttgcagt
ttgatctcag actgctgtgc tagcaaacag cgaggctccg ggggtgtagg accctccaag
ccaggtgctg gatataatct cctggtgtgc catttgataa gcctgttgga aaagcgcagt
attagggtgg gagtgacctg attttccagg tgccatctgt cacccctttc tttgactagg
aaagggaatt ccctgacccc tagtgcttcc caggtgaggt gatgccttgc cctgct
W
tggctcatgc atggtgcgct gcacccactg tccagcactc cccagtgaga tgaacctggt
acctcagttg gaaatgcaga aatcacccgt cttctgcatc actcacgctg ggagctgtag
actggagctg ttcctattcg gccatcttgg ctccaccctc TAATTTTTAA CTTTCAAAAG
ATTAGATACA TTTACCCTCT TCTGAATTTT AATTCCTGAT GGAAAGATTG TGAAATCTCA
AGAGGATAAT GAATCAGCTT CTGATTATAT TCTGGAATTG CGATTTTATC ACACATCCAA
GAATGCGTAT TCACTTTCCT TTACATTACA CACATGCATA ATACCATGCT GAGTGATGCT
There is no frequency submission for ss11118891.
No sufficient data to compute Hardy-weinberg probability for ss11118891.
There is no individual genotype data for ss11118891.
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