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Submitted SNP(ss) Details: ss11118891           
Submitter
HandleSC_SNP
Submitter SNP IDchr1.NT_077930.1_183812
RefSNP(rs#)rs6422542
Submitted Batch IDCHR20_NA17119_200306
Submitted DateJul 03, 2003
Publication Cited[1] A linkage disequilibrium map of human chromosome 20
[2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[3] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 3 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA17119_200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45080-585d09.p1cposition:150quality:43

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss11118891|allelePos=6177|len=6537|taxid=9606|alleles='T/A'|mol=Genomic
 TTACCTAAAA ATATTATTTT ATGTAAAATT GTTTTAAAGG TCAGTTTGCA CGTTTGAAAA
 GCATCTTGTA CAATGTTACA TAATATATTG CATATTTGGT TACATTGTTT TAACTGTGTA
 AATATGGTTT AAATCTGTAA TGCTCTTTAG TGCTGATCAT GATGCAAATC AAATTTATCT
 GTATAAAAGG CTCCTGTTAA ttttttttta ttatacttta agttttaggg tacatgtgca
 caaagtgtag gtttgctaca tatgtacaca tgtgccatgt tggtgtgctg cacccattaa
 ctcctcattt aacattaggt atatctccta atgctatccc taccccctcc acccacccca
 caacagtccc cagtgtgtga tgttcccctt cctgtatcca tgtttcctca ttgttcaatt
 cccacctatg agtgagaaca tgtggtgttt ggttttttcc cttgcaatag tttgctgaga
 atgatggttt ccagcttcat ccatgtccct acaaaggaca tgaactcatc attttttatg
 gctgcatggt attccatggt gtatatgtgc cacattttct taatccagtc tatcattgtt
 ggacatttgg gttggttcca agtctttgct attgtgaata gtgccacaat aaacatacgt
 gtgtatgtgt cttttgagca gcatgatttg taatcctttg ggtatatacc cagtaatggg
 atggctgggt caaatggtat ttctagttct agatccctga ggaatcacca cactgacttc
 cacagtggtt gaactagttt acagtcccat caacagtata aaagtgttcc tatttctcca
 catcttctcc agcacctgtt gtttcctgac tttttaatga tcgccattct aactggtgtg
 agatggtatc tcattgtggt tttgatttgc atttctctga tggccagtga tgatgagctt
 tttttcatgt gtcttttggc tgcataaatg tcttcttttg agaagtgtct gttcatttcc
 tttgcccaca ttttgatggg gttgtttgtt ttcttcttgt gaatttgttt gagttcattg
 tagattctgg atattagcca tttgtcagat gagtaggttg caaaactttt ctcccattct
 gtaggatgtc tattcactct gatgatagtt tcttttgctg tgcagaagct ccttagttta
 attagatccc atttgtcaat tttgtctttt gttgccattg cttttggtgt tttagacatg
 aagtccctgc ccatgcctat gtcctgaatg gtattgccta ggttttcttc tagggttttt
 atggttttag gtctaacatg taagtcttta atccatcttg aattaatttt tgtataaggt
 gtaaggaagg gatccagttt cagctttcta catatggcta gccagttttc ccagcaccat
 ttattaaata gggaatcctt tccctatttc ttgtttttgt caggtttttc aaagatcaga
 tagttgtaga tatgtggcat tatttctgag ggctctgtcc tgttccattg gtctatatct
 ctgttttggt actagtacca tgctgttttg gttactgtag ccttgtagta tagtttgaag
 tcaggtagca tgatgcctcc agctttgttc ttttgcctta gaattgattt ggcaatgcag
 gctctttttt ggttccatat gaactttaaa gtagtttttt tccaattctg tgaagaaagt
 ctttggtagt ttgatggaga tggcattgaa tctttaaatt accttgggca gtatggccat
 tttcaagata ttgattcttc ctacccatga gcatggaatg ttcttccatt tgtttgtatc
 cttttttatt tcattgagca gtgatttgca gttctccttg aagaggtcct tcacatccct
 tgtaagtggt attcctaggt attttattct ctttgaagca attgtgaatg ggagttcact
 catgatttgg ctctctgttt gtctgttatt ggtgtataag aatgcttgtg atttttgcac
 attgattttg tatcctgaga ctttgctgaa gttgtttatc agcttaacga gattttgggc
 tgagatgatg gggttttcca cattcacaat catgtcatct gcaaacaggg acaatttgac
 tgcctctttt cctaattgaa tgccctttat ttccttttcc ttcctgattg ccctggccag
 aacttccaac actatgttga ataggagtgg tgagagaggg catccctgtt ttgtgccagt
 tttcaaaggg aatgcttcca gtttttgcca ttcagtatga tattggctgt gggtttgtca
 tagatagctc ttattatttt gagatacgtt ctatcaatcc ctaatttatt gacagttttt
 agcatgaaga tttgctgaat tttgtcaaag gacttttctg cgtctattga gataatcatg
 tggtttttgt ctttggtcct gtttatatgc tggattacgt ttactgattt tcatatgttg
 aaccagcctt tcatcccagg gatgaaaccc gcttgatcat ggtggataag ctttttgatg
 tgttgtagga ttctgtttgc cagtatttta ttgaggattt ttgcatcact gttcatcaag
 gatattggtc taaaattctc tttttttgtt ttgtctctgc caggctttgg tatcaggatg
 atactggcct cataaaatga gttagggagg attccctctt tttctattga ttggaatagt
 ttcagaagga atggtaccag ctcctccttg tgccactggt agaatttggc tgtgaatcca
 tctggtcctg gacttttttt ggttggtaag ctattaatta ttgcctcaat ttcagagcct
 gttattggtc tattcagaga ttcagcttct tcctggttta gtcttgggag agtatacgtg
 tcgaggaatt tatccatttc ttctatattt tctagtttat ttgtgtagag gtgtttatag
 tattctctga tggtagtgtg tatttctgtg ggatcggtgg tgatatcccc tttgtcaatt
 tttattgcat ctatttgatt cttctttctt ttcttcttta ttagtcttgc tggtggtcta
 tcaattttgt tgatcttttc aaaaaaccag ctcctggatt cattgatttt ttgagggttt
 tttgtgtctc tatttccttc agttctgctc tgatctaagt tacttcttgc cttctgttat
 cttttgaatg tgtttgttct tgcttctcta gttcttttaa ttgtgatgtt aggatgtcaa
 ttttagttct ttcatgcttt ctcttgtggg catttagtgc tataaatttc cctccacaca
 ctgctttgaa tgtgtcccag agatactggt atgttgtgtc tttgttcttg ttggtttcaa
 ataaaatctt tatttctgcc ttcatttcgt tatgtaccca gtagtcattc aggagcaggt
 tgttcagttt ccatgtagtt gagtggtctt gagtgagttt ttaaatcctg agttgtagtt
 tgattgcact gtgttccgag agacagtttg ttatactttc tgttctttta catttgctaa
 ggagtgcttt acttccaatt atgtgctcaa ttttggaata ggtgtggtgt ggtgctgaaa
 agaatacata ttctgttgat ttggggtaca gagttctgta gatgtctatt aggtctgctt
 agggcagagc tgagttcaat tcctgtatat ccttgttaac tttctgtctc gttgatctgt
 ctaatgttga cagtggggtg ttaaagtctc ccattattat tgtgtggaag tctaaatcac
 tttgtaggtc actaaggact tgctttatga atctgggtgc ttctgtattg tgtgcatata
 tatttagaat agttagttct tgttgaattg atccctttac cattatgtaa tggccttctt
 tgtctctttt gatctttgtt ggattaaagt ctgttttatc cgagactagg attgcaaccc
 ctgccttttt ttgttttcca tttgcttggt agatcttcct ccatcccttt attttgagcc
 tatgtgtgtc tctgcacgtg agatgggttt cctggataca gcacactgat gggtcttgac
 tctttatcca atttgcctgt ctgcaccttt taattggagc atttaaccca tttacattta
 aggttagtat tgttatgtgt gaatttgatc ctgtcattat gacgttagct ggttattttc
 ctcgttagtt tatgcagttt cttcctagcc ttgatggtct ttacaatttg gcatggtttt
 acagtggctg gtaccagttg ttcctttcca tgtttagtgc ttccttcagg agatctttta
 gggcaggcct ggtggtgaca aaatctctca gcatttgctt gtctgtggag catattattt
 ctccctcact tatgaaggtt agtttggctg gatatgaaat tctgggttga aaattctttc
 ctttaagaat gttgaatatt ggcccctact ctcttctggc ttatagagtt tctgcagaga
 gatcagcagt tagtctgatg ggcttccttt tgtgggtaac ccgacctttc tctctggctg
 cctttaaaat tttttctttc atttcaactt tggtgaatct ggcaattatg tgtcttggaa
 ttgctcttct cgaggagtat ctttgtggca ttctctgtat ttcctgaatg tgaatgttgg
 cctgccttgc tagattgggg aagttctcct ggataatatc ctgcagagtg ttttccaact
 tggttccatt ctccccgtca ctttcaggta aaccaaatag acgtagattt gttctattga
 catagtccca tatttcttgg aggctttgtt catttctttt tattcttttt tctctaaact
 tctcttcatg cttcatttca ttcatttcat cttccatcgc tgataccctt tcttcccgtt
 gatcacatcg gttactgagg cttatgcatt tgtcgtgtag ttctcgtgcc atggttttca
 gctccatcag gtcctttaag gacttctcca cattggttat tctagttatc cattcgtcta
 attttttttt tcaaagtttt taacttcttt gccattggtt cgaacttcct cctttagctc
 ggagtacttt gatcttctga agtcttcctc tctcaactct tcaaagtcat tctccgtcca
 gctttgttcc attgctggtg aggagttgca ttcctttgga ggaggatagg cactctgatt
 tttagagttt ccagtttttc tgctcttttt ttccccatct ttgtggtttt atctaccttt
 ggtccttgat gatggtgaca tacagatggg gttttggtgt ggatgtcctt tctgtttgtt
 agttttcctt ctaacagtca gggccctcag ctgcaggtct gttggagttt actggaggtc
 tcctccagac actatttgcc tggggggtat cagcagtggt ggctgcagaa cagtggatat
 tggtgaagtg caaatgctgc tgcctgatcg ttcctctgga ggttttgtct cagaggggta
 cctggccatg tgaggtgtca gtctgcgcct actggggggt gcctcccagt taggctattg
 gggttcaggg acccactagg tgggggttgt ctgcccgttc tcagatctca agctgcatgc
 tgggagaacc actactctct tcaaagctgt cagacaggga catttaagtc tgcagaggtt
 attgctgtct tttgttggtc tgtgccctgc ccaccgaggt ggagcctaca gaggcaggct
 ggcctccttg agctgtggtg ggctccaccc agttcgaact tcctggctgc tttgtttact
 tactcaagcc cgagcaatgg cgggcgcccc cctcccccag ccccactgtt accttgcagt
 ttgatctcag actgctgtgc tagcaaacag cgaggctccg ggggtgtagg accctccaag
 ccaggtgctg gatataatct cctggtgtgc catttgataa gcctgttgga aaagcgcagt
 attagggtgg gagtgacctg attttccagg tgccatctgt cacccctttc tttgactagg
 aaagggaatt ccctgacccc tagtgcttcc caggtgaggt gatgccttgc cctgct
 W
 tggctcatgc atggtgcgct gcacccactg tccagcactc cccagtgaga tgaacctggt
 acctcagttg gaaatgcaga aatcacccgt cttctgcatc actcacgctg ggagctgtag
 actggagctg ttcctattcg gccatcttgg ctccaccctc TAATTTTTAA CTTTCAAAAG
 ATTAGATACA TTTACCCTCT TCTGAATTTT AATTCCTGAT GGAAAGATTG TGAAATCTCA
 AGAGGATAAT GAATCAGCTT CTGATTATAT TCTGGAATTG CGATTTTATC ACACATCCAA
 GAATGCGTAT TCACTTTCCT TTACATTACA CACATGCATA ATACCATGCT GAGTGATGCT

  Submitted Frequency for ss11118891 back to top
There is no frequency submission for ss11118891.


  dbSNP summary of Genotypes for ss11118891 back to top
No sufficient data to compute Hardy-weinberg probability for ss11118891.


  Submitted individual genotype for ss11118891 back to top
There is no individual genotype data for ss11118891.

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