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Submitted SNP(ss) Details: ss11118903           
Submitter
HandleSC_SNP
Submitter SNP IDchr1.NT_019273.15_2088895
RefSNP(rs#)rs7354829
Submitted Batch IDCHR20_NA17119_200306
Submitted DateJul 03, 2003
Publication Cited[1] A linkage disequilibrium map of human chromosome 20
[2] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[3] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 3 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR20_NA17119_200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:20SNP45080-854g12.p1cposition:-281quality:43

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss11118903|allelePos=4210|len=8608|taxid=9606|alleles='T/C'|mol=Genomic
 ACTTTTATAT TTCAACACAA AGCTAATTAA AATAAAACTC ACAAAAAAAG CATCTATCAT
 AAGTAGAGTT ACATTTTTTC TTACAATACG AAAATGTAAG CACTATCACA ATCAAGAAGT
 AAAAGCAAGC CATAACTCCA AAAATTTcct ttgcagtcac ttcccccatt cccaggcaca
 aacactgttt taccttgtat aattacagat atttttgcct tttctaaaat atcataggaa
 tgaaattaca tatataattt ctagctacat tcattacatt ttaaaatttc atccatgttt
 ttAAAATTTC ATTTTACTTT TTAATGTTTA ATTCTTATGA ATACttttga tataagcata
 caatatgtta taatcaaatt tgggtgatta ggatatccac cacccaaaac atttatttct
 ttgtgctggg aatattccaa atcttctctt atagttattt aaaaatatac aataaattat
 tgttaactat ttcaccttgt tgtgctatga aacactagaa attattcctt ttaattgttc
 ttttctaccc attaactgac ctgtcttcat tcaacccccc ccactactac tcctagcttc
 tggtaaccac cgttctattc agtgcctcca tgaaatcagt tgtgttagca cccacatgag
 tgagaacatg caatatttgt ctttccgtgc ctggcttatt tcacttaact tagcgtcatc
 gaggctcatc cctattgctg caaataacag tttttttgtt ttgtgtgTGT Gttttttttt
 ttttcccaag accagatctc actgttgtca cacaggctag ggtgaagtga gttaatcatg
 gctcactgca gcttcgacct cctaggctca aacaattctc ccacttaagc ctcccaaata
 gctaggacta ctggaacatg ccaccatgcc cgactaataa ttaacttttt gtagacacag
 gatctcactg tgttgcccaa gttggtcctg agctcctggg gtcaagtgat gctcccatct
 cagcctccca aaatattgag attacaggaa agagccacca agccAGAACA ATTtttcttt
 ttaaggctga ataatatccc attgtgtata tatactgcct tttctttctt cattcatcca
 ctgatggaac acacaggttg attctatatc ttagctatta tgaatagtgc tacaattaac
 atagtggtgc aggtatctct tcggtatgct gatttccttt ctttcaaata tacacccacc
 agtaatattg ttggatagta tagtagttct attttcagta ttttgaggaa gcttcatagt
 attttccata gtgactgtac taatttacgt tttcaacagt gtataagcat tttctttctc
 cacattcttg gcagcattta ttttgttttt gataaaagcc atttaactag ggtgaggtga
 tatcttatgg tggttttgat ttgcatgtca aatcaaattg atttcatttg atttgattat
 aagtgatgtt gagcatttct tcatgtatct gttgacaatt tgtgttttct ttttacaaat
 gtctattgaa atcttttgcc tattttatat agaaatattt gttttttatt gctattgagt
 tatttaaaat ccttatatat tctggttatt aatccctttt tggatgacta gttttcaaat
 atttccttcc attctgtagg ttgtctattc acgttgtttc tttctgtgca gttttttagc
 ttgatgttat cccattttta aattttggct ttggttgcct gtcaggtctt actcaagaaa
 tctttgccca gacaaatgtt ctgaaacatt tgcccagttt tcttctagta gtttcgtatc
 ttatgtttaa gCaccatcct ttccctaatg tatggtcttg gcttgtttgt caaaagagct
 gactgtaaat gtatgaattt atttctggac tctctattct attctactgg tttatgtgtc
 tgtttttgct ccagtactat gctattttgt ttactatagc cttgtagtat attttgaggt
 aacataatgt gatacatctg actttgttac tttgttacat ctgacttttg tgacttttgt
 tcacaattgc tttggctatt caggtcttct gtgagtccat acaaatttaa ggattgtttt
 cccactataa agaatgacac tggtttcatt aaatctgttg atcactttgg ttagtataaa
 cattttaaca atattaattc ttctaatgca tgaacatgtg atatcgttca atttctttgg
 tatctgcttc aatctctttc atcagtattt tatagttttc attgtaaatt ctgttaacct
 ccttggttaa atttattcca aagtatttaa ttttttggag ctattataaa tgggactgct
 tccttagttt ttcagatagc tctttattga aatatagaaa tgccattaca ttattcacgg
 acatgcatgt tgattttgta tcctgcaact ttattgaatt tatcagttct aacagatttt
 tgtcagaatc tttgtttttc tgaaaataac atcatctgtg aataatgaaa atttaagacc
 ttccttttta attctgatgt cctttctttc ttctccctca ataattaccc tggctagaat
 ttctggtgtg atactgaata caattgttaa aagtgggtat cttgtcttgt ttcagatctt
 ggaacaaaag gcttccaatt tttctgtttg tcaatatcat gctgtgagtt tctcatacat
 ggcctttact gtgtttaagt atgttccttc tctacccagt ttgctgtttt tatcatgaag
 gaatgtagaa ttacatcaaa tgcttttttt tttggcatct attgacatga tctatggttt
 ttgtccttga taacgttaat atgatattca attttattga ctGggccagg catggtggct
 cacacctgta atcctagcac tttgggaggc cgaggtgatc aattggggtc aggagtttga
 gaccagcctg gccaacatgg tgaaaccctg tctccactaa aaatacaaaa tttagccagg
 catggtggca catgcctgta atcctagcta ctcaggaggc tgaggcagaa ttgcttgaac
 ccgggaggtg gaggttgcag tgagccgaga tcataccact ccactccagc ctgttcttgc
 ttgtctagtt cttcaaggta taccattagg ttatttattt ggagtcttta ttgatttggc
 atttattatt ataaatttcc ttcttagtac tgttctgctg tatcctcata gttttggtat
 gttgtgtttc catcatcatt ggtctcaaca gatttttaaa cttcatttaa aatttcttca
 ctgacctatt ggttgttagg aacatgttta attttgatgt atttgtatag tttccaatgt
 ttctcttgtt attgctttct agttttattc cagtgtggtc agatacttga tattagtttg
 attttttaaa aatttgttaa ggtttgtgtc ataacatata gtctgcagaa ttctgcttgt
 gctgatgaga atgtgtattc tgcagctatt agaaaaaatg ttctataaat gtctgctagt
 tccattaggt ctagagtgta gtttactgtt tctttttgtc ctaatgacat gtacattgct
 gaaaatggga cactgcagtc gccttttatt atactgcagt ctacctctcc ctttaaacca
 attaatatat gttttatatg tttaattact ccaataatgg ttgcatatat atttacagtt
 gctaattcct cttggtaaat tggccacttt atccttacat tgatgttgtc tctaattttt
 agtttttgac ttgaagccta atttatctaa gcatagtagc tacttctgag atttttgatt
 tcctattgca tgaaatatct tttttcaacc attcactttc agtctatgtg tgtccttata
 gatggagtga gtttctagca ggcagcatat acctgggtct ttaaaaaaaa aattcagcca
 ctccatttct ttcaaatcga gaatttagtc cctttaaatt caattctaat attattagga
 aaaatttaca cctgccattt tgttgctttc tggttgtctt gtaaatcatt tcttcctttc
 ttactatctt ttctgtgtaa aagtgatttt gtcaagtaat atattttaat tctttggctt
 tgatattaa
 Y
 gtattatgag tttttgcttt gtggttataa ggctttaaaa aagtgtttta taataagtta
 ctttaaactg attacacctt aactttggtc agtacaagga aatactaaaa aactctaagc
 tctaagttta ttacccctac tcttagactt tttgttgtct ctgtatcttt ttatattgcc
 tatttcttaa gcaatattac ttttggtagg tttatgtttt agttttcatg ctaaactttc
 tagcatctta tacacaatta cagcattaga gtgctctgaa tgttgtgtgc ttagatttac
 cagtgagttt tccatcttca gatgatttct tgttgcacat tagagccctt ttctttcaga
 gtaaaaaaat ctttaggttg tcttgtaaga taggtctagt ggtgacaaat atctttcagc
 ttctgtttgt ctggaaagtc tagttcttta tgattgaagg atatctttgc tggatacagt
 attctcagtg gaagtttttt tgttgtcctt cagcacttta aatatgtctt cccacttcct
 cctgattgat aaggtttctg ttgagaagtc tgcttccaga tgtataggag ttcccttata
 cattatttac ttcttttctc ttcctgcttt taggatccct ttttttgtcc ctgaaacaga
 gtttaactat atgccttgtg gtattcttat tcaggcttaa ttctcttggt gttctctgat
 cttcttgtat ctgaagattc atatctttat ctaggtttgg aaagttctct attatgtctg
 aataaacttt ctaccccaat tgctttctct atatcccctt taagaccaat aacttgtatt
 tgctttttga tgctgttttc tacatcttat aaacatcttt tttttccatt tttctctcct
 ctgtgtattt ttaaatagcc tgagctcatt aattttctct tctgtttgat caattctgct
 gttgagacat agaggcattt ttctgatggt caactgaatt tttagctcca agatttgttt
 agtttttgat aattatttca aactttttta cagttctctg aaagaatcct tatttccttc
 tgttttattg tagtttactg agtttccaaa aaaatatatg tatattgaat tctcagtctg
 gaaggtcaca tatctctgtc actctaggat tgatcactgg tgcctcattt agtacatttg
 gtgaggccat attttcctgg atgtctgtga tgcttttgga cattcctaaa tgtctgcgca
 tgcactgcag atttatgtat ttattccagt cttcacagtc tgaccttgct tataacttct
 ttttcagagg gctctccaag agttcaaagt ggctgttaac tgcatccact tcagcagtag
 agggtaccct aaacctaagt gtgctgtgac acttgcagac tcctagccct aatgaattta
 gaaatgaggg agaattcctt gggttctcag agaaatcctt actctcttct gtctttcctc
 caagccaaat gagtccctct ctaggcctgg cttcttggtg ttgggggagg gttaatgcaa
 gcactgtcag ggccaccaaa gctgatactg cataacaacc gaggtccagt ctgccagacc
 agtacagtac ctgggtttgt gcaaggccaa cagctgctac tgtctgattg ccactgaatt
 ttattcaaaa cccaaggata atttagtcaa aggaaggtga agcatggagg gacttgggtc
 ccatcagggc agtagattct cttctggcct cagatgagtg tagaagcacc atccaggagt
 aatggtctgg aatcagaagc ttcaggattt ctgccattgc tttattttac tgaggctggg
 ctgtcactct ccttccccaa agcaggagtc tctctcctgt gctgcacttc ctggagttgg
 aggatgggtg atccatgtac tcccatggtc actgcagctg gtcccttgct gaatcaagcc
 aaagtaaaca gcctctgaaa gcagtacagc accagggctt gctcaagaac tgcagttaac
 atggcctagc tgtcagagaa atttatccag ggcctcaggg aactttagtc agttggtggc
 aaagcagacc aagtcttggg ttcctgctac tggggtagtg aattctcctc tagcccaggg
 ctattttaag tgctccctcc atgggcattg gtagaatttt gcctggtgcc gtttcattat
 tacaaggcag cactgagtta ttatgcaaag ttccactcat gtcactctcc cccaagcaca
 gagattctct cttcctgcta tgctgcctga gtctggggaa gcagtgttat aggcaatgtt
 aagaacatcc ttcctacctt cttcaatgca tttttcctca ttattatgct aaaactgtga
 tccatcacct caattattgc tggtgaggta ctggtgaact ccctcacttg aatttctcgt
 tcttatgaag gtgctttctt gcttggatag ttgttcagtg tgacattcct gcagggtgaa
 caattgctag agggttctat tcagccatct ttctccacct cAcatccatg tttttgcatg
 ttatttcttt ccttttattg attagcattt gattccatga atatagcaca atgtatataa
 ccactattct tttctggaaa acttatgtcc aggttggggt tattatgaat aaggctatga
 aatttcaggt acatgtcttt gtgtgaattt ctgttttcat ttctcttagg taaaaacata
 tcctatggaa ttgcagttaa tttggtaatt ctagatttat agtttttaaa aaaaaaaaaa
 aaaaaaaccc tgtcaatttt tcagagtgac tctatgactt taccaaccag aaatgtatac
 aaattccaat ttcAAGTCAT GTTTTTAAAA AAGACGATCA ATTGACtata tgcatttgtc
 tatttcagga ctctattgtg ctattggtct atttgtctat ctatgttaat actatattat
 ctcttttact gcaacattat aatacatctt gaaaccaggt acagtaagtc ctccacctgt
 ttgaagattc ctttggctat tctaaatgct ttgaatttcc agattttaga aacaacttgt
 caatttattt aaaatatact gttggaattt tgcttggggt tacaatgaat tcataaacca
 ccaagcagaa attgaaaatc ctaacaatat tgagtcgtcc aatatattta gtgacatatc
 tttccattta tttaggtatt ttaaatttct tctcaacagt gttttgtaac ttgtagtgta
 aaggtcttac aggtcttaca tgtgtgtcac tgaatggttc ctaagtatat ggctgtttta
 tgctattgta aatatgttat gtttcatttt ccaattattc attaatatag aaatgcaTAT
 TATCAATTGT CAAATTACTT TTTTATATCT GTTGACAATA ATCACATGGT TTTTCTCATT
 TTGCTATGTG GTGAATTATA TTGCTGGGTT AAGCCTAACA TATATACAAc cttttacact
 gctaaattct atttcttttt aagtattttt tgcatccata ttcacatgaa atactgattt
 ttaaatttct tttattgtac tattttgtca agtcttgtag tgggattgat atggtttgga
 tttgtgtccc catccaaatc tcatgttcaa ttgtaatccc cagtgttgga ggctggtcct
 ggtgggaggt gacttgttca cgggggtgga tccttcacga ctggtttaac accattcctt
 tggtgctgtt cttgtgagag agttctcatg agatcttgtc gtttaagagt gtgcagcaca
 tcccttctct ctcttcctcc tgctccagcc atgtaacatg taactgtttc ccctccgcct
 tccaccagga ttgtaagttt cctgaagctt ccccagaagc agaagccgct atgcttcctg
 tacagcctgc agcatcagga gccaattaaa ctccttttct ttataaattg cccagtctgt
 tatttcttta tagcaatgta agaatggatt aatacagggg ttatactggc ctcataaatt
 caaaattgtt ttgttttcta atgtttgaaa gaatctctgt agagtttaat attatctcta
 acctacacat ttgatgtaat tctccattgg agcaatcagg agttggtgtt ttctttttgg
 taacatttat gtttaccaat tcactttaat aaatatggag cttttttcat attttgtatc
 ctgcatcatt tttgagaagt gtgtttcaaa aggcatttgt ccatctaagt tattcaatta
 ttggcataaa gctgttcata acatGCAATT ATCTTTAATG TTAATAGACT AATGTCCTTT
 CTATTCTAAA CATTATTA

  Submitted Frequency for ss11118903 back to top
There is no frequency submission for ss11118903.


  dbSNP summary of Genotypes for ss11118903 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-JPT8686T=0.98837209
C=0.01162791T/T=0.97674417
C/T=0.02325581
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI104104T=0.93269229
C=0.06730770T/T=0.88461536
C/T=0.09615385
C/C=0.01923077
Pr(chiSq=2.851,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss11118903 back to top
There is no individual genotype data for ss11118903.

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