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Submitted SNP(ss) Details: ss115580854           
Submitter
HandleILLUMINA-UK
Submitter SNP IDNA18507_000000006_NCBI36.1_chrY_2782506
RefSNP(rs#)rs2075640
Submitted Batch IDILLUMINA_WTSI:NA18507_cY
Submitted DateJan 15, 2009
Publication Cited18987734
First entry to dbSNPJan 15 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodILLUMINA SEQUENCING
Ascertainment Samplesize2
PopulationYRI
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss115580854|allelePos=251|len=501|taxid=9606|alleles='G/A'|mol=Genomic
 CCCATTGAGG ACTATCAATT GGAAATATGT CCCTGAGGAA AAAATGATAT ACCAGTTGAT
 TGTGTGTTAC CACTCAGATA CACAGGCAAC AGGCTTTTAG CCTGTGATAA AGGACCAGAG
 GTTAGTTCAG CTGAGCACTC TTCCAGCAGC CACCAGAGGG TTCTGAAACA GATTCCCCCT
 TGGCAAGGTT TCCCAAATGT CTAAATTACT AAATCAGTAT GGGAGATCAT CAGCTCTGTG
 ACTGGTTAAT
 R
 TAGTTTTTCC CAAGAGCACT CCTTCTCTGA CCGAGGAAAT GCTGGAAATC GATGGGATAA
 GTAATGTCTG GGTGACTGCT TTAGGCTGGC TTTGTGTTTA CATATTGAAT TGATTTTCCT
 TGCTGTGTTT ATAGTACAAG TTGTGCAAAG TGAGGAAGAT TACTGTGGGA GTGAAGGGAA
 TCCCTCACCT GGTGACTCAT GATGCTCGAA CCATCCGCTA CCCAGATCCT GTCATCAAGG
 TGAACGATAC

  Submitted Frequency for ss115580854 back to top
There is no frequency submission for ss115580854.


  dbSNP summary of Genotypes for ss115580854 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		4646A=0.86956519
G=0.13043478A/A=0.86956519
G/G=0.13043478
Pr(chiSq=17.783,df=1)
=0.001		Genotype
Freq.
HapMap-JPT4646G=0.56521738
A=0.43478259G/G=0.56521738
A/A=0.43478259
Pr(chiSq=11.696,df=1)
=0.001		Genotype
Freq.

  Submitted individual genotype for ss115580854 back to top
There is no individual genotype data for ss115580854.

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