NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss116261204           
Submitter
HandleILLUMINA-UK
Submitter SNP IDNA18507_000000021_NCBI36.1_chr6_114257
RefSNP(rs#)rs6596791
Submitted Batch IDILLUMINA_WTSI:NA18507_c6
Submitted DateJan 17, 2009
Publication Cited18987734
First entry to dbSNPJan 17 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodILLUMINA SEQUENCING
Ascertainment Samplesize2
PopulationYRI
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss116261204|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 CACAAGCATG TCTTCCTGTA GACTGAAAAA ACTATACAGA AAAGTTTGTC TCAAAGCGCC
 CTCTAGTGAT AATACTAAAA ATCACAATCA GGAAAGTTAA GTTACTAAAT GCCAGGACGT
 GCCCAGAATA GTAGTAGTTT GGGCACTTTG AGTTTAGATT GTGACCTACT AAAAAACAAA
 TTAAATTCAT TAATATTTCC ATTTAGAAGA ATTCTGAAAA GTAATTTTAC AGCAAGATCA
 CTTTATTGAC
 Y
 ATAAAGCTTC AAAAATGCTA AAAGACTAAT AGACTAGGTT AACTACGTAA GATTTTTCAG
 GGGAAAAGGC CATACAAAAG TTAAAAAAAA AATGAGGGAA GAGACAGAAA CTGTCCTTGA
 CTAACATTTT AAATGTAAGT TTATTTACTA GCATTATTTT CAAAAATTAT ACTATCAGGA
 TAGCTTTCAC TTCCTACTAA TCTCATGAAG TTGTCTCACT AAAAATTATG CTTTCATGGC
 AAATTAATGA

  Submitted Frequency for ss116261204 back to top
There is no frequency submission for ss116261204.


  dbSNP summary of Genotypes for ss116261204 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		9090C=0.91111112
T=0.08888889C/C=0.82222223
C/T=0.17777778
Pr(chiSq=0.073,df=1)
=1.000		Genotype
Freq.
HapMap-JPT8888C=0.97727275
T=0.02272727C/C=0.95454544
C/T=0.04545455
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.
HapMap-YRI120120C=0.72500002
T=0.27500001C/C=0.53333336
C/T=0.38333333
T/T=0.08333334
Pr(chiSq=0.090,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss116261204 back to top
There is no individual genotype data for ss116261204.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement