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Submitted SNP(ss) Details: ss117555060           
Submitter
HandleILLUMINA-UK
Submitter SNP IDNA18507_000000016_NCBI36.1_chr2_6937
RefSNP(rs#)rs7595668
Submitted Batch IDILLUMINA_WTSI:NA18507_c2
Submitted DateJan 19, 2009
Publication Cited18987734
First entry to dbSNPJan 19 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodILLUMINA SEQUENCING
Ascertainment Samplesize2
PopulationYRI
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 6
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss117555060|allelePos=251|len=501|taxid=9606|alleles='A/G'|mol=Genomic
 TGCTGCCCAC AGAAACCAAG GCCATTCTTT GAAGACAAAC ATGTTTTAAT AGCATTTACA
 TTATATAATA GTGTAATATA ATTATTAATA ATGTAAAATT ATTTAGATTA TTATGTTATG
 ACTTTTGTAC AGACCTTTAC ACCTAGGTAT TCTGAAGTTG GTGGTCTGTG AGTGGCATCG
 AGTGATGACT GACACACTCT GACCTGGGGT AGAACAACAC GTCTCCCTGC AGTTTGCTGA
 ATTTTAGGGC
 R
 TCACCACCTG TTTTCAAGAG TGTGTTTTTC TATCCTCCCG AGTTTTGCCC ACCTAAGCAA
 TGGTTTTGCT GTAATAAAGA ATTACACTAT TTACCAAAAT GTTCCTTTGG AGAATAAAGT
 TTTCTTAAAC TATCAGGACC ATAGCTAATG TCAGTGGCGC CAAGGATCAG AAGGTAAAAA
 GGCCTTTTTT TGGGGGGGCC AAGAGAAAAA AAATCACCAC ATTTCAAACT GTCTCATGCT
 AGTCACCGGA

  Submitted Frequency for ss117555060 back to top
There is no frequency submission for ss117555060.


  dbSNP summary of Genotypes for ss117555060 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120G=0.98333335
A=0.01666667G/G=0.96666664
A/G=0.03333334
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090G=0.98888886
A=0.01111111G/G=0.97777778
A/G=0.02222222
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090G=0.98888886
A=0.01111111G/G=0.97777778
A/G=0.02222222
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI120120G=0.89166665
A=0.10833333G/G=0.81666666
A/G=0.15000001
A/A=0.03333334
Pr(chiSq=2.999,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss117555060 back to top
There is no individual genotype data for ss117555060.

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