Submitted SNP(ss) Details: ss120035122

Submitted SNP(ss) Details: ss120035122

Submitter
Handle	SNP500CANCER
Submitter SNP ID	CGFID_5
RefSNP(rs#)	rs78286574
Submitted Batch ID	SNP500CANCER_02_19_08
Submitted Date	Feb 24, 2009
Publication Cited	N.D.
First entry to dbSNP	Feb 24 2009 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	CGFID_5

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	ROCHE/454 NEXT-GENERATION SEQUENCING
Ascertainment Samplesize	134
Population	N.D.

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CCCTGTCTCT AGTAAAAATA CAAAAATTAG CTGGGCATGG TGGCAGACGC CTGTAATCCC
 AGCTACTTGG GAGGCTGAGG CAGGAGAATC ACTTGAACCC
 R
 GGAGGCGGAG GTTGCAGTGA GCCAAGATGG TACCACTGCA CTCCAGCCTG GGTAACGGTG
 AGATTCCATC TCAAAAAACA AAAAACATTC AGCAACACTA

Submitted Frequency for ss120035122

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
Pop1 - MULTI-NATIONAL	134				G/G=0.89552200 A/G=0.10447800		SNP500CANCER_02_19_08	SNP500CANCER

dbSNP summary of Genotypes for ss120035122

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
Pop1 - MULTI-NATIONAL	134	134	G=0.94776118	A=0.05223881	G/G=0.89552242 A/G=0.10447761	Pr(chiSq=0.021,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss120035122

There is no individual genotype data for ss120035122.

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