Submitted SNP(ss) Details: ss120035129

Submitted SNP(ss) Details: ss120035129

Submitter
Handle	SNP500CANCER
Submitter SNP ID	CGFID_12
RefSNP(rs#)	rs78935350
Submitted Batch ID	SNP500CANCER_02_19_08
Submitted Date	Feb 24, 2009
Publication Cited	N.D.
First entry to dbSNP	Feb 24 2009 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	CGFID_12

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	ROCHE/454 NEXT-GENERATION SEQUENCING
Ascertainment Samplesize	156
Population	N.D.

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 ATTCCCGTTT TACAGAGGCC ATAATGGTTA AGTAATTTCC CAATGTCACT TCACACTCAA
 GTGGAAGAGC AAGGTGGCCA ACCCAAAGCC CACGTTTCTT
 Y
 TCCTATAGAA GTCTTCCTCG TGGCTGACTG CTTGAAAATT TAGCCAGGTG TTAAAGGATC
 AAGACTGGAA GTGACTGGTG AACCATTTGC AGTGGTTCCA

Submitted Frequency for ss120035129

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
Pop1 - MULTI-NATIONAL	156				C/C=0.97435898 C/T=0.02564100		SNP500CANCER_02_19_08	SNP500CANCER

dbSNP summary of Genotypes for ss120035129

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
Pop1 - MULTI-NATIONAL	156	156	C=0.98717946	T=0.01282051	C/C=0.97435898 C/T=0.02564103	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss120035129

There is no individual genotype data for ss120035129.

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